Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1073 ATGGCCGTTGATCTCGCAACTTTTGGACAGATGGACGATCAGAATATAGCCATACAAGAAGCAGCCTCCGCTGGTTTACAGAGTATGGAGCATCTAATTCGAATCTTATCGAAAGATTCATCTCCAAACCCTAATTTCACTCATCGTCTTGATTGCTCTGAAATCACCGATTTCACCGTTTCCAAATTCAAGCGTCTCATCTCCCTCTTGAACCGGACCGGTCGCGCTAGGTTTCGTCGCGGACCTTCTCCTCCTCCTCCTTCTTCATCTCCTCCTGTTTCTGATTCAAATTCTGTCTCTCTACTTCATCATAATCCGATCCTCAATTCGCTCGATCCTCCATCGAAACCCGCTTTTCATAACCCTAATTTCACCACTAAATCATCAGACGCTAAGGATTCCGCTCCCGCTGAATCGGTCATGGAATACTCTACCACTCTGTTTTTAAAGGAAACAATCGGAAAATCACCTCCGACAACGACGACGACGTCGACGTCGTCTCTCATATCGTCGATTACCGGAGACGGCAGCGTTTCGAACGGAAAGCTTGATCTCTCGCTCTATACATCACCGGCGACCGTCGTCTCCGCCGGTAAGCCGCCGCTTTCATCAAGTCACAAGAGAAAATTCGATGATCGGTCTAGAATCGCTTGCAAGATTTCCTCCGATCGTTGCCACTGCGCGAAACGAAGGAAATCTGGAGTAAAGAAGACTGTACGAATCCCGGCGATTAGTTCGAAGATCGCCGATATACCTTCCGATGAATTCTCATGGAGAAAGTACGGTCAAAAACCGATTAAAGGATCGCCTTATCCAAGAGGTTATTATAGGTGCAGCACCGTCAAAGGATGTCCAGCGAGGAAACACGTGGAGCGATCTCGAGACGATCCCACGATGCTCCTCGTTACTTACGAGGGAGATCACCGTCACCCGCAGGCTACTACGGTGACCGGCGCAAACGTGGCTTTCATTTCTCAAAACAGTTGA 987 48.43 MAVDLATFGQMDDQNIAIQEAASAGLQSMEHLIRILSKDSSPNPNFTHRLDCSEITDFTVSKFKRLISLLNRTGRARFRRGPSPPPPSSSPPVSDSNSVSLLHHNPILNSLDPPSKPAFHNPNFTTKSSDAKDSAPAESVMEYSTTLFLKETIGKSPPTTTTTSTSSLISSITGDGSVSNGKLDLSLYTSPATVVSAGKPPLSSSHKRKFDDRSRIACKISSDRCHCAKRRKSGVKKTVRIPAISSKIADIPSDEFSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKHVERSRDDPTMLLVTYEGDHRHPQATTVTGANVAFISQNS 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46622608 46623839 + evm.model.ptg000008l.462 HCH8g1073 550171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1073 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 314 IPR044810 GO:0003700(InterPro)
HCH8g1073 328 Pfam Plant zinc cluster domain 214 250 IPR018872 -
HCH8g1073 328 SMART WRKY_cls 252 312 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g1073 328 Gene3D WRKY domain 238 313 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g1073 328 FunFam WRKY transcription factor 65 236 313 - -
HCH8g1073 328 ProSiteProfiles WRKY domain profile. 247 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g1073 328 Pfam WRKY DNA -binding domain 254 311 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g1073 328 MobiDBLite consensus disorder prediction 75 137 - -
HCH8g1073 328 MobiDBLite consensus disorder prediction 119 137 - -
HCH8g1073 328 SUPERFAMILY WRKY DNA-binding domain 250 312 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0297 HCH-Chr12:1703611 HCH8g1073 HCH-Chr8:46622608 4.60E-77 dispersed
HCH14g0304 HCH-Chr14:31675357 HCH8g1073 HCH-Chr8:46622608 1.10E-51 dispersed
HCH5g1320 HCH-Chr5:50115127 HCH8g1073 HCH-Chr8:46622608 4.80E-39 dispersed
HCH7g1655 HCH-Chr7:48631499 HCH8g1073 HCH-Chr8:46622608 3.90E-26 dispersed
HCH8g1073 HCH-Chr8:46622608 HCH8g1315 HCH-Chr8:48154728 4.50E-16 dispersed
HCH8g1073 HCH-Chr8:46622608 HCH12g0602 HCH-Chr12:3532882 4.50E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34049 PF03106 WRKY 5.60E-26 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1073 - - - 0.0