Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1078 ATGGGAGATATTGATGAACTTTGCAACACAAGGCTTGACCTTGGATTGGGATTTGGTGAATATGTTCCAAAGAAGATGAATAGTAATAATAATAAGGGTATGGTTTTTTCTGACTTTTCTTTTACTCTCATTCCAAAAGAGGAAGCTATTATTAACATGGAGATTCAAGCTTCGACTGATGAATATCTCAAGAGAAGAAGAAGCAATGACAGCTTCCATGACCATGACCATGACCATGATTCTTCTCTTGGAAAAAGAGATTCTTGTAACAATTACACCTCCATTAATGGAGATCAACAAAGAGAGAGAAAGAAACTCAGGCTTTCTAAAGAACAATCTTCTTTGCTTGAAGAGAGCTTCAAACTTCATACCACCCTTAATCCGGCTCAAAAACAGGCACTTGCCCAAAAATTGAATTTGAGGACAAGACAAGTGGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACGAAATTGAAACAAACAGAAGTGGATTGTGAATTTTTGAAGAAATGCTGTGAAAGGCTGAGTGAAGAGAATAGGAGATTGAAGAAAGAGGTGGCGGAATTAAAATCATTAAAAGTTGGAACTTCCCACCAATTATATATTCAGCTACCCAAGGCGGCGACGCTCTCTATTTGCCCCTCTTGTGACAAACTAACCAAGTCCGCCACCGCCGCCACCACCGTAGATGGTTTGGAAGCCAACACCCCGCCACCATAA 720 39.86 MGDIDELCNTRLDLGLGFGEYVPKKMNSNNNKGMVFSDFSFTLIPKEEAIINMEIQASTDEYLKRRRSNDSFHDHDHDHDSSLGKRDSCNNYTSINGDQQRERKKLRLSKEQSSLLEESFKLHTTLNPAQKQALAQKLNLRTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLSEENRRLKKEVAELKSLKVGTSHQLYIQLPKAATLSICPSCDKLTKSATAATTVDGLEANTPPP 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46647974 46649287 + evm.model.ptg000008l.457 HCH8g1078 550176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1078 239 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH8g1078 239 SMART HOX_1 101 163 IPR001356 GO:0003677(InterPro)
HCH8g1078 239 SUPERFAMILY Homeodomain-like 87 160 IPR009057 -
HCH8g1078 239 Pfam Homeodomain 103 157 IPR001356 GO:0003677(InterPro)
HCH8g1078 239 CDD homeodomain 103 160 IPR001356 GO:0003677(InterPro)
HCH8g1078 239 SMART halz 159 202 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g1078 239 MobiDBLite consensus disorder prediction 69 108 - -
HCH8g1078 239 MobiDBLite consensus disorder prediction 69 85 - -
HCH8g1078 239 Pfam Homeobox associated leucine zipper 159 192 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH8g1078 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 227 IPR050762 -
HCH8g1078 239 Gene3D - 95 164 - -
HCH8g1078 239 Coils Coil 158 192 - -
HCH8g1078 239 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1036 HCH-Chr6:45096222 HCH8g1078 HCH-Chr8:46647974 1.50E-39 dispersed
HCH7g1755 HCH-Chr7:49218164 HCH8g1078 HCH-Chr8:46647974 9.80E-39 dispersed
HCH8g1078 HCH-Chr8:46647974 HCH14g0398 HCH-Chr14:33013592 2.70E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34050 PF00046 Homeodomain 1.80E-15 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1078 K09338 - csv:101203427 244.973