Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1079 ATGCCTCGCCGAGTACTCGAAGGAGTATCTGAAGCTCAGATGAAAAGTAGTTCCTCATCGATGGCACATGATTCAGCTTTGTTCTTTTTCCTTGGGATGCTAGTTGTGCTGGTAATATTGTTGATTCTCATAGCAGTCTTTCGGAGATCTCTCAAACCGAAAAAGGCGGTGAAGTTGATAACACAAACTGGAATTACTCAAGGATCAGCAGATTTGTTGAGTGATACCCTCCAATCAATAATTTACTTTGATTTTCAAACATTGAAAAAGGCAACAAAGAACTTTCACCCCACAAACCTTCTTGGGCAAGGAGGATTTGGACCGGTCTATTTGGGAAAGCTAGAAGATGAAAGATTGGTAGCAATTAAGAAACTGTCACTCAACAAATCCCAGCAAGGAGAACCTGAATTTCTATCAGAAGTCAGACTGATAACAAACATCCAACACAAGAACCTAGTTCGCCTGCTTGGTTGTTGCTCGGATGGGCCGCAACGGCTGCTTGTGTATGAATACATGAAGAACAAGAGTTTGGATCTCATAATATATGGGGGAATCGATCAATTCCTGAAATGGAACACCAGATTGAAGATTATCAGAGGCATTGCTAAAGGGTTGCAGTATCTACATGAGGACTCGCACATAAGAATCGTTCACCGGGACATAAAAGCAAGTAACATTCTTCTTGATGATAAATTTCAGCCGAGGATTGGTGATTTTGGGCTGGCCAGGTTCTTCCCTGAAGACCAAGCTTACCTTAGCACTACATTTGCTGGAACTCTAGGTTATACAGCACCAGAATATGCAATTAGAGGAGAATTGTCAGAGAAGGCAGATGTATACAGTTTTGGAGTTCTTGTGCTTGAAATCATCAGTGGAAGAAAAAACACAGATCTCTCTTTATCATCAGAAATGCAATATCTTCCTGAATATGCATGGAAACTATACGAGAGGTCGGCAGTAATCGAACTTGTGGATCCAAAGATGAAGGAAGATGGTTGTGAGGAGAAGGATGTATTGCATGCAATTCAAGTGGCTCTGTTATGCCTTCAGCCTCATGGCAATCTGAGACCTCCAATGTCTGAGATTGTAGCCATGTTAACATATAAAATTGAAATAGTTGGAACACCTATAAAACCAACTTTCTTAGACAGAAGGCCTAGAAGGAACAAAGATTTCTCGTGGAATAATCATTCAGATACCTTTCCTTCTCCTCTACATTGA 1221 40.87 MPRRVLEGVSEAQMKSSSSSMAHDSALFFFLGMLVVLVILLILIAVFRRSLKPKKAVKLITQTGITQGSADLLSDTLQSIIYFDFQTLKKATKNFHPTNLLGQGGFGPVYLGKLEDERLVAIKKLSLNKSQQGEPEFLSEVRLITNIQHKNLVRLLGCCSDGPQRLLVYEYMKNKSLDLIIYGGIDQFLKWNTRLKIIRGIAKGLQYLHEDSHIRIVHRDIKASNILLDDKFQPRIGDFGLARFFPEDQAYLSTTFAGTLGYTAPEYAIRGELSEKADVYSFGVLVLEIISGRKNTDLSLSSEMQYLPEYAWKLYERSAVIELVDPKMKEDGCEEKDVLHAIQVALLCLQPHGNLRPPMSEIVAMLTYKIEIVGTPIKPTFLDRRPRRNKDFSWNNHSDTFPSPLH 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46661780 46663969 + evm.model.ptg000008l.456 HCH8g1079 550177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1079 406 Gene3D Transferase(Phosphotransferase) domain 1 172 373 - -
HCH8g1079 406 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 11 389 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH8g1079 406 FunFam Cysteine-rich receptor-like protein kinase 10 60 171 - -
HCH8g1079 406 Gene3D Phosphorylase Kinase; domain 1 58 171 - -
HCH8g1079 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1079 406 ProSiteProfiles Protein kinase domain profile. 95 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1079 406 CDD STKc_IRAK 101 367 - -
HCH8g1079 406 SUPERFAMILY Protein kinase-like (PK-like) 76 367 IPR011009 -
HCH8g1079 406 SMART serkin_6 95 368 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1079 406 Pfam Protein kinase domain 97 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1079 406 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 172 376 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1079 HCH-Chr8:46661780 HCH14g0842 HCH-Chr14:36302300 1.40E-75 dispersed
HCH8g1079 HCH-Chr8:46661780 HCH9g0130 HCH-Chr9:723123 3.50E-79 transposed
HCH8g1079 HCH-Chr8:46661780 HCH14g0846 HCH-Chr14:36321853 3.50E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81721 PF00069 Pkinase 2.20E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1079 - - - 0.0