Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1095 ATGGCACGTCCATCTTCGCCTCACCTCATTGTTGTTTTCTTCATTTTGTTAGAGATCATTGTCTCATGGGGTGCTTCCGACCACGAAGCCCTTCTCAAGTTCAAAGGTTATCTGGAAATTAGCAGCAGCAACAATAATGCATTAGCCAGCTGGAAAGAGAGTTCTCCTCCTTGCTCTGGCGACAAAGCAAACTGGGTTGGCATACTTTGTGAGAAGGGAAACGTTTGGGGATTGAAGCTTGAGAACATGGGGCTAAAAGGCCGTATCGATGTGGAATCGCTCGAGGGGATGCCGCAATTAAGAAGTATTAGTTTAATGAACAATAGTTTTGAGGGGTCTTTGCCGGATATAAAGAGACTTGGGGCATTGAAGGCATTGTTCTTGTCTCAAAACCATTTCTTCGGCGTGATTCCGGGCGACAAATTTTCCGGCATGTTGTCTTTGAAGAAAGTTCATTTGGCAGAAAACCAGTTGGAGGGTGCAATTCCTTGGTCATTAGTAGAATTACCTCGGTTGTTGGAGTTGAAGCTTGAAGGGAACAGATTTGCAGGCCAATTGCCAAATTTCCAGCAGAAGTCATTGAAGTCTTTTAATGTATCAAACAACCAACAACTTCAAGGGCCAATCCCCGCAGGCCTAAATCACATAGATCCAACCTCCTTTTCTGGCGATGAGGGTTTATGTGGAGAGCCAATCAGGAAACCATGCAATATCGTCACAAAGAAGCCATCAATCGTGAGCATCATCATGGTTTCGGTAGCTGTGGCAGTGGCACTACTTGCCATTGGTGCAGGAATAGTCATTCTCAACCGAAGGAACCACCCGTCGCCAACCATAGAGGATCCATCCAACATCTTACAAAACAAATTTGGTGGTGTCATTGAATCGGATCAAGCAGCAGGAGCAGCGTCAAGATCACCGGACCGGGGCTCCAGCCATGAAAGTGGATCTGGAAGAAGGGCGGCCGACAATGCGAAGTTATCATTCGTAAAAGAGGAAGCAGAGAGGTTTGATTTATCAGACTTGCTTAAAGCCTCTGCAGAGATACTGGGAAGTGGGTACTTTGGGTCTTCTTACAAAGCTGCCTTGACCAATGGAGCAGTGATGGTTGTAAAGAGGTTTAAGCAAATGAACAATGTGGATAAAGAGGAATTCCAACAACATATGAGAAGGATTGGAAGGTTGAAACATACCAACTTGCTTCCTCTTGTTGCTTACTACTATAAAAAGGAAGAAAAGCTTCTCATTTCAGACTATGTTGAGAAGGGTAGCTTGGCTGTCAACCTTCATGGATACCAAGCTCTGGGTCAACCAGCCTTGGATTGGACTACACGGTTAAAGATTGCAAAAGGCATAGCAAAGGGTCTTCGATATCTCTACAATGAACTTCCAAGTCTAATATCAGCACATGGCCATCTCAAGTCCTCAAACGTCCTTCTAAAAGCCTCCTATGAACCTCTACTTTCAGACTACGGTCTTATACCAGTTGTCAACCAAGAACATGCTCAAGAGCTCATGGTTGCATACAAATCTCCAGAGTACTCGCAACATCGTCGTATCACAAAGAAGACAGATGTTTGGAGTTTGGGGCTGCTAATATTGGAGTTACTAACGGGGAAATTCCCTGCCAACTTCTTGCATCAAAGCAAAGGAGATGATGATGAAGATTTGGCAAACTGGGTCAAGTCTGTTCCTCAACAAGAATGGCCTAACAAGGTGTTTGACAAAGACATGGGACCAACCAAGAACAGTGAGGGTGAGATTCTGAAGCTTTTGAGGATCGGGTTGGCGTGCGCCGAAGGCGATGTCGAGAAGAGGATGGATTTGCGAGAAGCTGTGGAGAAGATTGAAGAGTTGAAAGAAAAAGATGGTGATGATGATTTCTACTCTTCATATGCAAGTGAAGCTGATGTAATGTCTACAAGAGGATTATCAGATGAGATCAGTTTCCCAATATGA 1959 44.51 MARPSSPHLIVVFFILLEIIVSWGASDHEALLKFKGYLEISSSNNNALASWKESSPPCSGDKANWVGILCEKGNVWGLKLENMGLKGRIDVESLEGMPQLRSISLMNNSFEGSLPDIKRLGALKALFLSQNHFFGVIPGDKFSGMLSLKKVHLAENQLEGAIPWSLVELPRLLELKLEGNRFAGQLPNFQQKSLKSFNVSNNQQLQGPIPAGLNHIDPTSFSGDEGLCGEPIRKPCNIVTKKPSIVSIIMVSVAVAVALLAIGAGIVILNRRNHPSPTIEDPSNILQNKFGGVIESDQAAGAASRSPDRGSSHESGSGRRAADNAKLSFVKEEAERFDLSDLLKASAEILGSGYFGSSYKAALTNGAVMVVKRFKQMNNVDKEEFQQHMRRIGRLKHTNLLPLVAYYYKKEEKLLISDYVEKGSLAVNLHGYQALGQPALDWTTRLKIAKGIAKGLRYLYNELPSLISAHGHLKSSNVLLKASYEPLLSDYGLIPVVNQEHAQELMVAYKSPEYSQHRRITKKTDVWSLGLLILELLTGKFPANFLHQSKGDDDEDLANWVKSVPQQEWPNKVFDKDMGPTKNSEGEILKLLRIGLACAEGDVEKRMDLREAVEKIEELKEKDGDDDFYSSYASEADVMSTRGLSDEISFPI 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46758794 46760995 + evm.model.ptg000008l.440 HCH8g1095 550193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1095 652 FunFam Pollen receptor-like kinase 1 420 630 - -
HCH8g1095 652 FunFam Nuclear pore complex protein NUP107 24 188 - -
HCH8g1095 652 Coils Coil 602 622 - -
HCH8g1095 652 Pfam Protein kinase domain 348 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1095 652 FunFam pollen receptor-like kinase 1 313 419 - -
HCH8g1095 652 SUPERFAMILY L domain-like 55 215 - -
HCH8g1095 652 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 26 621 IPR046959 -
HCH8g1095 652 MobiDBLite consensus disorder prediction 297 323 - -
HCH8g1095 652 Pfam Leucine rich repeat N-terminal domain 26 70 IPR013210 -
HCH8g1095 652 ProSiteProfiles Protein kinase domain profile. 344 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1095 652 Gene3D Transferase(Phosphotransferase) domain 1 420 638 - -
HCH8g1095 652 Gene3D Phosphorylase Kinase; domain 1 311 419 - -
HCH8g1095 652 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515(InterPro)
HCH8g1095 652 Gene3D Ribonuclease Inhibitor 26 143 IPR032675 -
HCH8g1095 652 Gene3D Ribonuclease Inhibitor 144 225 IPR032675 -
HCH8g1095 652 SUPERFAMILY Protein kinase-like (PK-like) 348 618 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0287 HCH-Chr12:1611618 HCH8g1095 HCH-Chr8:46758794 1.40E-138 dispersed
HCH4g0363 HCH-Chr4:2404730 HCH8g1095 HCH-Chr8:46758794 1.70E-147 dispersed
HCH8g1095 HCH-Chr8:46758794 HCH9g0846 HCH-Chr9:5984425 1.80E-64 dispersed
HCH10g0580 HCH-Chr10:4647146 HCH8g1095 HCH-Chr8:46758794 8.40E-112 transposed
HCH11g0994 HCH-Chr11:41492154 HCH8g1095 HCH-Chr8:46758794 1.80E-74 transposed
HCH6g0004 HCH-Chr6:328906 HCH8g1095 HCH-Chr8:46758794 1.00E-131 transposed
HCH3g0220 HCH-Chr3:1405698 HCH8g1095 HCH-Chr8:46758794 3.80E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81722 PF00069 Pkinase 9.30E-29 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1095 K28077 - csv:101213261 899.042