Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1117 ATGCTGGATTTGACAGCACATCATTCACCATCATCTCCGGGAAGCAATTGTCGGCTTTCTTTAATGGAGAATTTGCTCGGTCTTCTCAGAATTCGTATCAAACGTGGCTTCAATCTTGCCGTTCGTGATGTTCGTAGCAGCGATCCTTATGTTGTCGTCAAGATGGGCAAACAAAAAGTAAAGACACGTGTGATAAAGAAGGATGTCAATCCTGTGTGGAATGAAGATCTAACTCTTTCTGTCAGTGACCCAAATCTTCCAATTAAGCTGACTGTTTATGATCACGACACATTTAGCAAGGATGATAAGATGGGCGACGCCGAGTTCGATATTAGACCGTTCGTGGAAGCGCTGAAGATGAATTTGAAGAGCCTTGCAAATGGAGCGACGATCTCACGAATACTACCGAGCAGACAAAATTGTCTCGCCGAAGAGAGCTGTGTTGTGTGGAAAGATGGGAAGGTAATCCAGGAAATCTACGTGAGATTGAGAAACGTCGAATGCGGCGAAGTCGAAATCCAGTTGCAGTGGATTGACCTTCCAGGTTCCAAAGGGTGA 558 44.98 MLDLTAHHSPSSPGSNCRLSLMENLLGLLRIRIKRGFNLAVRDVRSSDPYVVVKMGKQKVKTRVIKKDVNPVWNEDLTLSVSDPNLPIKLTVYDHDTFSKDDKMGDAEFDIRPFVEALKMNLKSLANGATISRILPSRQNCLAEESCVVWKDGKVIQEIYVRLRNVECGEVEIQLQWIDLPGSKG 185
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 46904233 46906289 + evm.model.ptg000008l.418 HCH8g1117 550215
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1117 185 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 22 184 IPR044562 -
HCH8g1117 185 Gene3D C2 domain 23 184 IPR035892 -
HCH8g1117 185 Pfam C2 domain 27 114 IPR000008 -
HCH8g1117 185 ProSiteProfiles C2 domain profile. 9 124 IPR000008 -
HCH8g1117 185 SMART C2_3c 28 123 IPR000008 -
HCH8g1117 185 CDD C2_ArfGAP 26 169 - -
HCH8g1117 185 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 27 172 IPR035892 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0858 HCH-Chr3:6733170 HCH8g1117 HCH-Chr8:46904233 8.30E-34 dispersed
HCH3g1032 HCH-Chr3:14180502 HCH8g1117 HCH-Chr8:46904233 1.40E-33 dispersed
HCH3g1033 HCH-Chr3:14238597 HCH8g1117 HCH-Chr8:46904233 1.10E-31 dispersed
HCH3g1048 HCH-Chr3:15067251 HCH8g1117 HCH-Chr8:46904233 1.50E-09 dispersed
HCH4g0800 HCH-Chr4:5168979 HCH8g1117 HCH-Chr8:46904233 5.70E-08 dispersed
HCH8g1117 HCH-Chr8:46904233 HCH9g0420 HCH-Chr9:2628674 1.30E-65 dispersed
HCH3g0211 HCH-Chr3:1352552 HCH8g1117 HCH-Chr8:46904233 4.10E-75 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1117 - - - 0.0