Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g1117 | ATGCTGGATTTGACAGCACATCATTCACCATCATCTCCGGGAAGCAATTGTCGGCTTTCTTTAATGGAGAATTTGCTCGGTCTTCTCAGAATTCGTATCAAACGTGGCTTCAATCTTGCCGTTCGTGATGTTCGTAGCAGCGATCCTTATGTTGTCGTCAAGATGGGCAAACAAAAAGTAAAGACACGTGTGATAAAGAAGGATGTCAATCCTGTGTGGAATGAAGATCTAACTCTTTCTGTCAGTGACCCAAATCTTCCAATTAAGCTGACTGTTTATGATCACGACACATTTAGCAAGGATGATAAGATGGGCGACGCCGAGTTCGATATTAGACCGTTCGTGGAAGCGCTGAAGATGAATTTGAAGAGCCTTGCAAATGGAGCGACGATCTCACGAATACTACCGAGCAGACAAAATTGTCTCGCCGAAGAGAGCTGTGTTGTGTGGAAAGATGGGAAGGTAATCCAGGAAATCTACGTGAGATTGAGAAACGTCGAATGCGGCGAAGTCGAAATCCAGTTGCAGTGGATTGACCTTCCAGGTTCCAAAGGGTGA | 558 | 44.98 | MLDLTAHHSPSSPGSNCRLSLMENLLGLLRIRIKRGFNLAVRDVRSSDPYVVVKMGKQKVKTRVIKKDVNPVWNEDLTLSVSDPNLPIKLTVYDHDTFSKDDKMGDAEFDIRPFVEALKMNLKSLANGATISRILPSRQNCLAEESCVVWKDGKVIQEIYVRLRNVECGEVEIQLQWIDLPGSKG | 185 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 46904233 | 46906289 | + | evm.model.ptg000008l.418 | HCH8g1117 | 550215 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g1117 | 185 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 22 | 184 | IPR044562 | - | |
| HCH8g1117 | 185 | Gene3D | C2 domain | 23 | 184 | IPR035892 | - | |
| HCH8g1117 | 185 | Pfam | C2 domain | 27 | 114 | IPR000008 | - | |
| HCH8g1117 | 185 | ProSiteProfiles | C2 domain profile. | 9 | 124 | IPR000008 | - | |
| HCH8g1117 | 185 | SMART | C2_3c | 28 | 123 | IPR000008 | - | |
| HCH8g1117 | 185 | CDD | C2_ArfGAP | 26 | 169 | - | - | |
| HCH8g1117 | 185 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 27 | 172 | IPR035892 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g0858 | HCH-Chr3:6733170 | HCH8g1117 | HCH-Chr8:46904233 | 8.30E-34 | dispersed | |
| HCH3g1032 | HCH-Chr3:14180502 | HCH8g1117 | HCH-Chr8:46904233 | 1.40E-33 | dispersed | |
| HCH3g1033 | HCH-Chr3:14238597 | HCH8g1117 | HCH-Chr8:46904233 | 1.10E-31 | dispersed | |
| HCH3g1048 | HCH-Chr3:15067251 | HCH8g1117 | HCH-Chr8:46904233 | 1.50E-09 | dispersed | |
| HCH4g0800 | HCH-Chr4:5168979 | HCH8g1117 | HCH-Chr8:46904233 | 5.70E-08 | dispersed | |
| HCH8g1117 | HCH-Chr8:46904233 | HCH9g0420 | HCH-Chr9:2628674 | 1.30E-65 | dispersed | |
| HCH3g0211 | HCH-Chr3:1352552 | HCH8g1117 | HCH-Chr8:46904233 | 4.10E-75 | wgd |
Pathway information