Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1125 ATGGGGAGTGGTACTCTCGTGGACGGTGTTCGTCGCTGGTTTCATCGTCGTGTTTCTACTTCTTCTTCGTCTTCCTCTTCTTCTAATATTACTCTAAATTCAAATTCTCATATCAATCCTGATCCCAATCCTAATCATCATCATAATAATGTTGATCATCCTGAAAATGGCTCCAGTTTATTTCTAAACGATTTACGCAAACCCCATCAAAATCAAGAAACGGAAGAAAGAATTGTTGAATTAGAGGAAACGGACATTGATTACTATTCCTTAAAGCTCATCAAAGTTCCTAAGCGGATAAATCATTTCAAAGCTCTTCCTTTTTCTTCGATGGATTCCCACAAAAAGGGTGGGATGGAAACTGATTTTTTCACAGAGTATGGAGAGGCCAACAGATATCAGGTTCAAGAAATAATTGGTAAAGGAAGCTATGGTATTGTTGGTTCTGCCATTGATACTCAGTCTGAAGAGAGGGTTGCAATTAAGAAAATTAACGATGTTTTTGAGCACGTGTCTGATGCGACGAGAATTTTAAGAGAAATTAAACTCCTACGGTTGCTTCGCCATCCAGATATAGTAGAAATAAAGCACATTATGCTTCCTCCATCGCGAAGGGAGTTTAGAGATATCTATGTTGTTTTTGAGTTGATGGAATCTGACCTTCACCAAGTAATTAAGGCCAATGATGATCTTACTCCTGAGCATCATCAGTTTTTCTTGTACCAGCTTCTTCGTGGTCTGAAATATACACATACAGCAAATGTATTTCATCGTGATTTAAAGCCCAAAAACATTTTAGCTAATGCTGACTGCAAATTGAAAATATGCGATTTCGGGCTTGCTCGTGTATCATTTAATGATGCTCCATCCGCTATTTTCTGGACTGACTATGTTGCAACTCGCTGGTATCGTGCTCCTGAACTCTGTGGCTCCTTTTTCTCAAAATACACTCCTGCAATTGATATTTGGAGCATAGGATGCATATTTGCAGAAATGCTAACTGGGAAGCCACTGTTTCCTGGTAAAAACGTGGTTCACCAACTAGATCTCATGACTGATGTGCTTGGCACACCTTCCGCCGAGTCCATTGCAAGGATTAGAAACGAAAAGGCAAGAAGATACCTAAGTAACATGAGGAGAAAACAGCCGGTGTCACTGACACAAAAGTTCCCGAATGCAGATCCTTTGGCTCTGAGCTTACTGCAAAGGCTGCTGGCATTTGATCCGAAAGATCGGCCAACAGCGGAAGAGGCATTAGCAGATCCATATTTTAGAGGATTGGCAAATGTGGAGAGGGAGCCATCGACTCAACCGATATCAAAACTGGAGTTTGAATTTGAGAGGAGGAAATTGACAAAAGATGATGTGAGAGAGTTGATATATAGAGAGATATTGGAGTATCATCCACAGATGCTGCAGGAGTATCTAAGAAGTGGAGAACAAACAAGTTTCATGTACCCAAGTGGGGTTGATCGATTCAAAAGACAATTTGCGCATCTGGAGGAACTTCAGGGTAAGGGTGAAAGAAGTTCACCTCTTTTAAGGCAGCATGCTTCCTTACCCAGGGAACGAGTGTGTGCTCCCAAGGAAGAGGTGGTTCCTCCTCCGGAGAATGATTTGGAAACTAGAAATGTTGCCACCACTATTCACAGTCCTCATGCTTCTGACGATCCAAACACTAATAATAATAATGAACCAAATGGACTTAACAAGCCTAACTACACTGCCCGTAGCTTGTTGAAGAGTGCTAGCATTAGTGCTTCCAAGTGTATCGGCGTCACTCCAAGGAAAGATCTCGAGGAAGAACCAATTACTGAGAATAATGATGAGGCAGTCGATGGGTTGTCTAACAATGTTGCAGCCTTGCATACTTGA 1875 41.44 MGSGTLVDGVRRWFHRRVSTSSSSSSSSNITLNSNSHINPDPNPNHHHNNVDHPENGSSLFLNDLRKPHQNQETEERIVELEETDIDYYSLKLIKVPKRINHFKALPFSSMDSHKKGGMETDFFTEYGEANRYQVQEIIGKGSYGIVGSAIDTQSEERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYTHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDVLGTPSAESIARIRNEKARRYLSNMRRKQPVSLTQKFPNADPLALSLLQRLLAFDPKDRPTAEEALADPYFRGLANVEREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRSGEQTSFMYPSGVDRFKRQFAHLEELQGKGERSSPLLRQHASLPRERVCAPKEEVVPPPENDLETRNVATTIHSPHASDDPNTNNNNEPNGLNKPNYTARSLLKSASISASKCIGVTPRKDLEEEPITENNDEAVDGLSNNVAALHT 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46964354 46967893 + evm.model.ptg000008l.410 HCH8g1125 550223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1125 624 MobiDBLite consensus disorder prediction 17 63 - -
HCH8g1125 624 FunFam Mitogen-activated protein kinase 219 447 - -
HCH8g1125 624 FunFam Mitogen-activated protein kinase 448 470 - -
HCH8g1125 624 MobiDBLite consensus disorder prediction 549 574 - -
HCH8g1125 624 ProSitePatterns MAP kinase signature. 168 271 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1125 624 SUPERFAMILY Protein kinase-like (PK-like) 128 429 IPR011009 -
HCH8g1125 624 Gene3D Phosphorylase Kinase; domain 1 149 470 - -
HCH8g1125 624 MobiDBLite consensus disorder prediction 17 45 - -
HCH8g1125 624 Pfam Protein kinase domain 133 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1125 624 ProSiteProfiles Protein kinase domain profile. 133 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1125 624 SMART serkin_6 133 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1125 624 MobiDBLite consensus disorder prediction 600 624 - -
HCH8g1125 624 CDD STKc_TDY_MAPK 132 469 - -
HCH8g1125 624 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 130 465 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH8g1125 624 ProSitePatterns Protein kinases ATP-binding region signature. 139 163 IPR017441 GO:0005524(InterPro)
HCH8g1125 624 FunFam Mitogen-activated protein kinase 123 227 - -
HCH8g1125 624 Gene3D Transferase(Phosphotransferase) domain 1 219 447 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0999 HCH-Chr13:24577761 HCH8g1125 HCH-Chr8:46964354 1.30E-06 dispersed
HCH2g0905 HCH-Chr2:52532151 HCH8g1125 HCH-Chr8:46964354 1.10E-193 dispersed
HCH5g0707 HCH-Chr5:5113115 HCH8g1125 HCH-Chr8:46964354 5.90E-24 dispersed
HCH7g0055 HCH-Chr7:379128 HCH8g1125 HCH-Chr8:46964354 2.70E-198 dispersed
HCH8g1125 HCH-Chr8:46964354 HCH9g1407 HCH-Chr9:46468642 2.20E-43 dispersed
HCH8g1125 HCH-Chr8:46964354 HCH11g0743 HCH-Chr11:36188735 5.30E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81724 PF00069 Pkinase 1.20E-66 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1125 - - - 0.0