Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1127 ATGGCTGGAGGAGGTGATAATAATCAAGCTGATATGACACTTCATTCACTAAACTCGAAGATGTCTGGAGTTCTTGCTGATCATGAACCAACTGAAAAATGCGGCGGTGGCGGTAATCACCAAAGGTCATGCTATGATGCTACGTTGGTTTCTTCCAAATTGCCAAAGGTGGTGCCACCGATATCGGTTGCGGCCGATACGGATCAAACCCTACGGCGGCCTCGAGGAAGGCCTGCCGGCTCCAAAAACAAGCCAAAACCGCCAATTATCGTCACTCGAGATAGCGCCAACGCTCTCCGAGCACACGCTATCGAAGTCAGCTCCGGCTGCGACGTTAACGAGAGCCTCTCAAATTTCGCACGTCGGAAACAGCGCGGCATTTGCATTCTTAGTGGAAGCGGCTGCGTTACGAACGTCACGCTCAGGCAGGCAGCCTCGTCAGGAGCAATCGTCACTCTCCATGGACGGTTCGAGATCCTCTCATTGCTTGGCTCAATCTTGCCACCGCCGGCGCCGTCAGGGATCACCGGACTAACAATTTACTTAGCTGGAGCACAAGGGCAAGTGGTTGGTGGGGTTGTGGTAGGGGCATTGATTGCATCAGGCCCCGTCGTGATCATGGCGGCGACGTTCATGAACGCAACGTTTGACCGTCTGCCGTCGGACGACGATGAAGTAGCCGCCGCCGTGCAAAACGGAGTACATTATCAAAATGGTCGTAATCATCACCACCTTGATGTTTCTGATCTTTATGGAATGCCGCAGAACTTGATTACTAATAGCAGTCTTCCACCGGAAATTTACTCTTGGGCGGCGGCCGGAAGAACCATGTCCAAGACTTAG 843 52.67 MAGGGDNNQADMTLHSLNSKMSGVLADHEPTEKCGGGGNHQRSCYDATLVSSKLPKVVPPISVAADTDQTLRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGICILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSLLGSILPPPAPSGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDDEVAAAVQNGVHYQNGRNHHHLDVSDLYGMPQNLITNSSLPPEIYSWAAAGRTMSKT 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46973655 46974497 + evm.model.ptg000008l.408 HCH8g1127 550225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1127 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
HCH8g1127 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 67 240 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH8g1127 280 FunFam AT-hook motif nuclear-localized protein 99 226 - -
HCH8g1127 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 227 - -
HCH8g1127 280 ProSiteProfiles PPC domain profile profile. 96 234 IPR005175 -
HCH8g1127 280 MobiDBLite consensus disorder prediction 61 89 - -
HCH8g1127 280 Gene3D - 99 232 - -
HCH8g1127 280 CDD DUF296 100 182 IPR005175 -
HCH8g1127 280 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1551 HCH-Chr7:47972397 HCH8g1127 HCH-Chr8:46973655 1.20E-62 dispersed
HCH8g0392 HCH-Chr8:35478028 HCH8g1127 HCH-Chr8:46973655 2.10E-33 dispersed
HCH8g1127 HCH-Chr8:46973655 HCH13g1201 HCH-Chr13:39302289 2.00E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1127 - - - 0.0