Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1131 ATGTCTCGCCGAACCCAAATCGAAGGCGGTGAAAAAGACATTTCCGCCAGCGAAGAAGACGATGAAGACGGCGCTTTCGACGAAGACATGGAAATCCTACGTAGAGCCTGTAAGCTTGTCGGAACTAATCCCGAACAATATATTAATCCTCTTTCATCACCCGTCGCCGGAAACCACTTTCTCGTCGGCGGCGAATGTAGCGGTAGCAAAGACGGTTTTGATTCCGACGACTTCGACGATCTTGAACTTGTTCAAAACATACGGAACCGATTTTCGATATCGGCCGATAACGATGACGACGAGTGCCAGCCTTTATCTCTTAAGCCGTTGAATACTCTCCCTCCGGTTTCGCCGGACGAAGAGGAAGATGATTTCGAGACGCTTCGTGCGATTCAGCGGCGGTTCTCGGCATATGAAAGTGATAGTTTGACCCACAACATGGATAAACCCAATCATTCTTGTGATCGACCTGCGGATATGGAAAGTTTTAACAGAACAGCTGCTGATGGAGAAACTTCCTTAGAAAGGAAATCTATGTTCAATGTTGGAAAGGCGAGCTTACCGAAGGCTGCATTGGTATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGAAGCAAGATGATTCACCTTGAAGCCAGAATTGAGGAGAACAAAGAACTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGACTTGTTGTAGAAGAAGAATAGGTTGTGTGCTGTCTCAGAAGAAAGATCCTCGAGTCCAGTTAATTTCTGCCCAAAAAACGGGGGCTAGTAAGGATTCATCAAAGAAGGACAAACAGTTATCTGCCATGTATTATGGCCCAGCTGAGAATTCACATGTTGCGAACTACAGAATGGCATTGGAAAAGCTTCCACTTTCAGTAGATCGGAAAAAATGGTCCAATGCAGAAAGGGAAAATCTTGTGAATGGAATAAAACGGCAATTCCAAGAAATGGTGCTGCAGATTTCAGTTGACCAAATCAGTGGGCTACAAGGATTTCCAGGAGATTCATATGATTTTGATAACATTCTTGATTCGATTAAAGAACTAGACATTACTCCTGAAAAGATCAGGGAGTTTTTGCCAAAAGTTAACTGGGACAAATTGGCTTCCATGTATATTGCGGGCCGCTCAGGTGCTGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCTCTAATCAATCAGAATCCATGGACTGCAGTTGAGGATAAGAATCTTTTGTTTATTATTCAACAGAAGGGGATAAGTAACTGGATTGATATTGCAGTTTCATTGGGTACAAACAGAACTCCTTTCCAGTGCTTGTCTCGATACCAAAGGAGTTTAAATGCTTCCATATTAAAAAGGGAGTGGACCAAAGATGAGGATGAGAAACTCCGATCTGCGGTTGACACTTTTGGGGAGGGGGATTGGCAAGCAATAGCTTCTACTTTGGAAGGGAGGGCTGGTACACAGTGCTCTAATAGATGGAGAAAAGCTCTTGACCCAGCTAGGACAAAAAAAGGTTCTTTCACTTCAGATGAAGATAATCGCCTGAAAATAGCTGTAATGCTTTTTGGGCCTAAAAATTGGAACAGGAAGGCAGAATTTTTGCCTGGTCGAAATCAAGTTCAATGTAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGGTGTGAATGGACCGAAGAGGAGGATTTGAGGCTAGAAATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGGATGTGTGCCTTCACGTACAGATAATGATTGCAGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAAGAAGCCAGAAGGATTCAGAAAGCTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAACGTCCTGCCCTTGGTCCTGCTGACTTTCGACCTTTACCCAATACAAATTTATCATGTGATGCCGAAAATTCAAAACCTGCTGCAAAAAGAGATATGAAATCAAGAAGGATACCAGTTTTAAGAAAGGAGAAGACTGTGAGTGGTGATAATTCAAAGAAGACTAAATCAAATACGCAGATGATTCCAGCCGATGACGCAACTGCCCAGGTGGAAATTGCAAACAAAAGGTCTTCTATTCCGATGGAGGTTAAATCTAGAACTTCTCGAAGAAAAGTAAATGGAGGTAGAGCTTATGCTAAGAAGAAAAGGGTTCCATTGAACAATGAGAAATGTGCGGAACAAAATTTGGACACCGAGAGCGTTGGGTTGCAGCTGAATGGTAGGGAATCAGAGAGGACGAATAGTGACTGCATCGAGACTGTTGATGAGAATGTTACAGATGTACCTGAGAACAGAGTTGCACAAAAGCTTTCAAGAAGGGATGTCTGTGTTTTAGATCAAGAAGATAATCAGAATTCTACAGGATCTTCTGGAGTGTCGGTGTTGTCAGAAACAATTAATGACGTGGACCATTATAATCCCTCCATTCTTCCAGATGCAGGCGTGCTGGATATTAGTATTACAAATGGGAATGATATCACGGAAAGGAGTAGCACCTTCAATCTGCCTTCAAAGAGCAAAGCAGACTTGGATTTGGCTGATAGTAACAGCTTCTCATCACCTTCTGGATGCTTGGAATTCAGGATAACTGATGGTGAAGGGGTCAATAGCCGTTCTGCTGCTAAAATTATGTCCAATGAGGTTGATATGGTTTCCAAGCACCAAAGTAGGAAGAAGAGAAGGACTAAAGAATCAAAAGAGAAGCACGTTTTGTTGGTTCCTTCTCAACAAGTCGTGCTGGAGAGATCAGTGACCAGGAAGCGTTGTCACAAGGATAGAGATGATGACACGCTTGCTTGTCTTCGTGATAAATCAAAGAAGAGAAAGCTTAAAGGTGCTGATATTAGTCAGTCAGGAACAATGAATGTAATTGAACCATTTCATACGGGTGCAGGGCGGCCCAATGATGCATGCCCAGTCTTATCCTCCATGGAAAATGGTAACTGTGGCCTACAGGCCTGCAGCTTGGAGGGAACCCCAACTGTCTTAGCTGGTGATAATGAGCCTGAAAGATCTGATTTGCCCAATAGGCATTTAGATAGACTATCACATAACGTTAGACGGGATCCAAGTGAAGTGGCTGATGACAGCACCCTTGCTTGCTTCCTTCAAAAGAAATTGAAGAGAACGACCCGTGACAAGAAAGCCAATGGTGATCCTCCTACCGTTTCCCTTGAAGTCGATGAGGATGATGGTGATCTTACTCTTGCTTTGTTTCTCAAGGATATTAAATCGAAGAAAAGGAAGCATCAAGCTCCTAGTTAA 3333 42.84 MSRRTQIEGGEKDISASEEDDEDGAFDEDMEILRRACKLVGTNPEQYINPLSSPVAGNHFLVGGECSGSKDGFDSDDFDDLELVQNIRNRFSISADNDDDECQPLSLKPLNTLPPVSPDEEEDDFETLRAIQRRFSAYESDSLTHNMDKPNHSCDRPADMESFNRTAADGETSLERKSMFNVGKASLPKAALVFVDAIKKNRSQQKFIRSKMIHLEARIEENKELRKRFKILKDFQTCCRRRIGCVLSQKKDPRVQLISAQKTGASKDSSKKDKQLSAMYYGPAENSHVANYRMALEKLPLSVDRKKWSNAERENLVNGIKRQFQEMVLQISVDQISGLQGFPGDSYDFDNILDSIKELDITPEKIREFLPKVNWDKLASMYIAGRSGAECEARWLNFEDPLINQNPWTAVEDKNLLFIIQQKGISNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLRSAVDTFGEGDWQAIASTLEGRAGTQCSNRWRKALDPARTKKGSFTSDEDNRLKIAVMLFGPKNWNRKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAGCVPSRTDNDCRRRWKKLFPNEVPLLQEARRIQKAALISNFVDRESERPALGPADFRPLPNTNLSCDAENSKPAAKRDMKSRRIPVLRKEKTVSGDNSKKTKSNTQMIPADDATAQVEIANKRSSIPMEVKSRTSRRKVNGGRAYAKKKRVPLNNEKCAEQNLDTESVGLQLNGRESERTNSDCIETVDENVTDVPENRVAQKLSRRDVCVLDQEDNQNSTGSSGVSVLSETINDVDHYNPSILPDAGVLDISITNGNDITERSSTFNLPSKSKADLDLADSNSFSSPSGCLEFRITDGEGVNSRSAAKIMSNEVDMVSKHQSRKKRRTKESKEKHVLLVPSQQVVLERSVTRKRCHKDRDDDTLACLRDKSKKRKLKGADISQSGTMNVIEPFHTGAGRPNDACPVLSSMENGNCGLQACSLEGTPTVLAGDNEPERSDLPNRHLDRLSHNVRRDPSEVADDSTLACFLQKKLKRTTRDKKANGDPPTVSLEVDEDDGDLTLALFLKDIKSKKRKHQAPS 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46996430 47006625 + evm.model.ptg000008l.404 HCH8g1131 550229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1131 1110 CDD SANT 460 502 IPR001005 -
HCH8g1131 1110 Gene3D - 457 507 - -
HCH8g1131 1110 MobiDBLite consensus disorder prediction 1 28 - -
HCH8g1131 1110 MobiDBLite consensus disorder prediction 638 669 - -
HCH8g1131 1110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 453 508 IPR017930 -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 400 452 IPR001005 -
HCH8g1131 1110 CDD SANT 513 555 IPR001005 -
HCH8g1131 1110 SUPERFAMILY Homeodomain-like 508 604 IPR009057 -
HCH8g1131 1110 Gene3D - 402 452 - -
HCH8g1131 1110 Gene3D - 565 611 - -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 506 557 IPR001005 -
HCH8g1131 1110 Gene3D - 509 563 - -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 563 607 IPR001005 -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 406 450 IPR001005 -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 458 503 IPR001005 -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 511 557 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 510 557 IPR017930 -
HCH8g1131 1110 CDD SANT 565 608 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 453 504 IPR001005 -
HCH8g1131 1110 SMART sant 457 506 IPR001005 -
HCH8g1131 1110 SMART sant 304 401 IPR001005 -
HCH8g1131 1110 SMART sant 510 559 IPR001005 -
HCH8g1131 1110 SMART sant 562 610 IPR001005 -
HCH8g1131 1110 SMART sant 404 454 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 558 608 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 558 612 IPR017930 -
HCH8g1131 1110 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 1072 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
HCH8g1131 1110 SUPERFAMILY Homeodomain-like 437 506 IPR009057 -
HCH8g1131 1110 SUPERFAMILY Homeodomain-like 381 453 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1131 K09422 - - csv:101216287 1145.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0201 HCH-Chr8:8317945 HCH8g1131 HCH-Chr8:46996430 1.50E-11 dispersed
HCH8g1131 HCH-Chr8:46996430 HCH2g0779 HCH-Chr2:51450946 1.30E-11 dispersed
HCH8g1131 HCH-Chr8:46996430 HCH2g0778 HCH-Chr2:51428840 3.50E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0201 . 1 849 MYB-Related Transcription Factor Family AT1G09770 73.1 0.0e+00 1151.0
HCH8g1131 . 185 653 MYB-Related Transcription Factor Family AT3G18100 56.6 3.9e-155 545.4
HCH8g1131 . 185 653 MYB-Related Transcription Factor Family AT3G18100 56.6 3.9e-155 545.4
HCH8g0201 . 1 849 MYB-Related Transcription Factor Family AT1G09770 73.1 0.0e+00 1151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34051 PF00249 Myb_DNA-binding 4.90E-09 CL0123 HCH TF