Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1131 ATGTCTCGCCGAACCCAAATCGAAGGCGGTGAAAAAGACATTTCCGCCAGCGAAGAAGACGATGAAGACGGCGCTTTCGACGAAGACATGGAAATCCTACGTAGAGCCTGTAAGCTTGTCGGAACTAATCCCGAACAATATATTAATCCTCTTTCATCACCCGTCGCCGGAAACCACTTTCTCGTCGGCGGCGAATGTAGCGGTAGCAAAGACGGTTTTGATTCCGACGACTTCGACGATCTTGAACTTGTTCAAAACATACGGAACCGATTTTCGATATCGGCCGATAACGATGACGACGAGTGCCAGCCTTTATCTCTTAAGCCGTTGAATACTCTCCCTCCGGTTTCGCCGGACGAAGAGGAAGATGATTTCGAGACGCTTCGTGCGATTCAGCGGCGGTTCTCGGCATATGAAAGTGATAGTTTGACCCACAACATGGATAAACCCAATCATTCTTGTGATCGACCTGCGGATATGGAAAGTTTTAACAGAACAGCTGCTGATGGAGAAACTTCCTTAGAAAGGAAATCTATGTTCAATGTTGGAAAGGCGAGCTTACCGAAGGCTGCATTGGTATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGAAGCAAGATGATTCACCTTGAAGCCAGAATTGAGGAGAACAAAGAACTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGACTTGTTGTAGAAGAAGAATAGGTTGTGTGCTGTCTCAGAAGAAAGATCCTCGAGTCCAGTTAATTTCTGCCCAAAAAACGGGGGCTAGTAAGGATTCATCAAAGAAGGACAAACAGTTATCTGCCATGTATTATGGCCCAGCTGAGAATTCACATGTTGCGAACTACAGAATGGCATTGGAAAAGCTTCCACTTTCAGTAGATCGGAAAAAATGGTCCAATGCAGAAAGGGAAAATCTTGTGAATGGAATAAAACGGCAATTCCAAGAAATGGTGCTGCAGATTTCAGTTGACCAAATCAGTGGGCTACAAGGATTTCCAGGAGATTCATATGATTTTGATAACATTCTTGATTCGATTAAAGAACTAGACATTACTCCTGAAAAGATCAGGGAGTTTTTGCCAAAAGTTAACTGGGACAAATTGGCTTCCATGTATATTGCGGGCCGCTCAGGTGCTGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCTCTAATCAATCAGAATCCATGGACTGCAGTTGAGGATAAGAATCTTTTGTTTATTATTCAACAGAAGGGGATAAGTAACTGGATTGATATTGCAGTTTCATTGGGTACAAACAGAACTCCTTTCCAGTGCTTGTCTCGATACCAAAGGAGTTTAAATGCTTCCATATTAAAAAGGGAGTGGACCAAAGATGAGGATGAGAAACTCCGATCTGCGGTTGACACTTTTGGGGAGGGGGATTGGCAAGCAATAGCTTCTACTTTGGAAGGGAGGGCTGGTACACAGTGCTCTAATAGATGGAGAAAAGCTCTTGACCCAGCTAGGACAAAAAAAGGTTCTTTCACTTCAGATGAAGATAATCGCCTGAAAATAGCTGTAATGCTTTTTGGGCCTAAAAATTGGAACAGGAAGGCAGAATTTTTGCCTGGTCGAAATCAAGTTCAATGTAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGGTGTGAATGGACCGAAGAGGAGGATTTGAGGCTAGAAATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGGATGTGTGCCTTCACGTACAGATAATGATTGCAGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAAGAAGCCAGAAGGATTCAGAAAGCTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAACGTCCTGCCCTTGGTCCTGCTGACTTTCGACCTTTACCCAATACAAATTTATCATGTGATGCCGAAAATTCAAAACCTGCTGCAAAAAGAGATATGAAATCAAGAAGGATACCAGTTTTAAGAAAGGAGAAGACTGTGAGTGGTGATAATTCAAAGAAGACTAAATCAAATACGCAGATGATTCCAGCCGATGACGCAACTGCCCAGGTGGAAATTGCAAACAAAAGGTCTTCTATTCCGATGGAGGTTAAATCTAGAACTTCTCGAAGAAAAGTAAATGGAGGTAGAGCTTATGCTAAGAAGAAAAGGGTTCCATTGAACAATGAGAAATGTGCGGAACAAAATTTGGACACCGAGAGCGTTGGGTTGCAGCTGAATGGTAGGGAATCAGAGAGGACGAATAGTGACTGCATCGAGACTGTTGATGAGAATGTTACAGATGTACCTGAGAACAGAGTTGCACAAAAGCTTTCAAGAAGGGATGTCTGTGTTTTAGATCAAGAAGATAATCAGAATTCTACAGGATCTTCTGGAGTGTCGGTGTTGTCAGAAACAATTAATGACGTGGACCATTATAATCCCTCCATTCTTCCAGATGCAGGCGTGCTGGATATTAGTATTACAAATGGGAATGATATCACGGAAAGGAGTAGCACCTTCAATCTGCCTTCAAAGAGCAAAGCAGACTTGGATTTGGCTGATAGTAACAGCTTCTCATCACCTTCTGGATGCTTGGAATTCAGGATAACTGATGGTGAAGGGGTCAATAGCCGTTCTGCTGCTAAAATTATGTCCAATGAGGTTGATATGGTTTCCAAGCACCAAAGTAGGAAGAAGAGAAGGACTAAAGAATCAAAAGAGAAGCACGTTTTGTTGGTTCCTTCTCAACAAGTCGTGCTGGAGAGATCAGTGACCAGGAAGCGTTGTCACAAGGATAGAGATGATGACACGCTTGCTTGTCTTCGTGATAAATCAAAGAAGAGAAAGCTTAAAGGTGCTGATATTAGTCAGTCAGGAACAATGAATGTAATTGAACCATTTCATACGGGTGCAGGGCGGCCCAATGATGCATGCCCAGTCTTATCCTCCATGGAAAATGGTAACTGTGGCCTACAGGCCTGCAGCTTGGAGGGAACCCCAACTGTCTTAGCTGGTGATAATGAGCCTGAAAGATCTGATTTGCCCAATAGGCATTTAGATAGACTATCACATAACGTTAGACGGGATCCAAGTGAAGTGGCTGATGACAGCACCCTTGCTTGCTTCCTTCAAAAGAAATTGAAGAGAACGACCCGTGACAAGAAAGCCAATGGTGATCCTCCTACCGTTTCCCTTGAAGTCGATGAGGATGATGGTGATCTTACTCTTGCTTTGTTTCTCAAGGATATTAAATCGAAGAAAAGGAAGCATCAAGCTCCTAGTTAA 3333 42.84 MSRRTQIEGGEKDISASEEDDEDGAFDEDMEILRRACKLVGTNPEQYINPLSSPVAGNHFLVGGECSGSKDGFDSDDFDDLELVQNIRNRFSISADNDDDECQPLSLKPLNTLPPVSPDEEEDDFETLRAIQRRFSAYESDSLTHNMDKPNHSCDRPADMESFNRTAADGETSLERKSMFNVGKASLPKAALVFVDAIKKNRSQQKFIRSKMIHLEARIEENKELRKRFKILKDFQTCCRRRIGCVLSQKKDPRVQLISAQKTGASKDSSKKDKQLSAMYYGPAENSHVANYRMALEKLPLSVDRKKWSNAERENLVNGIKRQFQEMVLQISVDQISGLQGFPGDSYDFDNILDSIKELDITPEKIREFLPKVNWDKLASMYIAGRSGAECEARWLNFEDPLINQNPWTAVEDKNLLFIIQQKGISNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLRSAVDTFGEGDWQAIASTLEGRAGTQCSNRWRKALDPARTKKGSFTSDEDNRLKIAVMLFGPKNWNRKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAGCVPSRTDNDCRRRWKKLFPNEVPLLQEARRIQKAALISNFVDRESERPALGPADFRPLPNTNLSCDAENSKPAAKRDMKSRRIPVLRKEKTVSGDNSKKTKSNTQMIPADDATAQVEIANKRSSIPMEVKSRTSRRKVNGGRAYAKKKRVPLNNEKCAEQNLDTESVGLQLNGRESERTNSDCIETVDENVTDVPENRVAQKLSRRDVCVLDQEDNQNSTGSSGVSVLSETINDVDHYNPSILPDAGVLDISITNGNDITERSSTFNLPSKSKADLDLADSNSFSSPSGCLEFRITDGEGVNSRSAAKIMSNEVDMVSKHQSRKKRRTKESKEKHVLLVPSQQVVLERSVTRKRCHKDRDDDTLACLRDKSKKRKLKGADISQSGTMNVIEPFHTGAGRPNDACPVLSSMENGNCGLQACSLEGTPTVLAGDNEPERSDLPNRHLDRLSHNVRRDPSEVADDSTLACFLQKKLKRTTRDKKANGDPPTVSLEVDEDDGDLTLALFLKDIKSKKRKHQAPS 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46996430 47006625 + evm.model.ptg000008l.404 HCH8g1131 550229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1131 1110 CDD SANT 460 502 IPR001005 -
HCH8g1131 1110 Gene3D - 457 507 - -
HCH8g1131 1110 MobiDBLite consensus disorder prediction 1 28 - -
HCH8g1131 1110 MobiDBLite consensus disorder prediction 638 669 - -
HCH8g1131 1110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 453 508 IPR017930 -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 400 452 IPR001005 -
HCH8g1131 1110 CDD SANT 513 555 IPR001005 -
HCH8g1131 1110 SUPERFAMILY Homeodomain-like 508 604 IPR009057 -
HCH8g1131 1110 Gene3D - 402 452 - -
HCH8g1131 1110 Gene3D - 565 611 - -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 506 557 IPR001005 -
HCH8g1131 1110 Gene3D - 509 563 - -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 563 607 IPR001005 -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 406 450 IPR001005 -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 458 503 IPR001005 -
HCH8g1131 1110 Pfam Myb-like DNA-binding domain 511 557 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 510 557 IPR017930 -
HCH8g1131 1110 CDD SANT 565 608 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 453 504 IPR001005 -
HCH8g1131 1110 SMART sant 457 506 IPR001005 -
HCH8g1131 1110 SMART sant 304 401 IPR001005 -
HCH8g1131 1110 SMART sant 510 559 IPR001005 -
HCH8g1131 1110 SMART sant 562 610 IPR001005 -
HCH8g1131 1110 SMART sant 404 454 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-like domain profile. 558 608 IPR001005 -
HCH8g1131 1110 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 558 612 IPR017930 -
HCH8g1131 1110 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 17 1072 IPR051575 GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER)
HCH8g1131 1110 SUPERFAMILY Homeodomain-like 437 506 IPR009057 -
HCH8g1131 1110 SUPERFAMILY Homeodomain-like 381 453 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0201 HCH-Chr8:8317945 HCH8g1131 HCH-Chr8:46996430 1.50E-11 dispersed
HCH8g1131 HCH-Chr8:46996430 HCH2g0779 HCH-Chr2:51450946 1.30E-11 dispersed
HCH8g1131 HCH-Chr8:46996430 HCH2g0778 HCH-Chr2:51428840 3.50E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34051 PF00249 Myb_DNA-binding 4.90E-09 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1131 K09422 - csv:101216287 1145.18