Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1131 | ATGTCTCGCCGAACCCAAATCGAAGGCGGTGAAAAAGACATTTCCGCCAGCGAAGAAGACGATGAAGACGGCGCTTTCGACGAAGACATGGAAATCCTACGTAGAGCCTGTAAGCTTGTCGGAACTAATCCCGAACAATATATTAATCCTCTTTCATCACCCGTCGCCGGAAACCACTTTCTCGTCGGCGGCGAATGTAGCGGTAGCAAAGACGGTTTTGATTCCGACGACTTCGACGATCTTGAACTTGTTCAAAACATACGGAACCGATTTTCGATATCGGCCGATAACGATGACGACGAGTGCCAGCCTTTATCTCTTAAGCCGTTGAATACTCTCCCTCCGGTTTCGCCGGACGAAGAGGAAGATGATTTCGAGACGCTTCGTGCGATTCAGCGGCGGTTCTCGGCATATGAAAGTGATAGTTTGACCCACAACATGGATAAACCCAATCATTCTTGTGATCGACCTGCGGATATGGAAAGTTTTAACAGAACAGCTGCTGATGGAGAAACTTCCTTAGAAAGGAAATCTATGTTCAATGTTGGAAAGGCGAGCTTACCGAAGGCTGCATTGGTATTTGTTGATGCCATCAAGAAGAATAGGTCCCAGCAGAAGTTTATTCGAAGCAAGATGATTCACCTTGAAGCCAGAATTGAGGAGAACAAAGAACTCAGAAAACGTTTCAAAATTCTCAAAGATTTCCAGACTTGTTGTAGAAGAAGAATAGGTTGTGTGCTGTCTCAGAAGAAAGATCCTCGAGTCCAGTTAATTTCTGCCCAAAAAACGGGGGCTAGTAAGGATTCATCAAAGAAGGACAAACAGTTATCTGCCATGTATTATGGCCCAGCTGAGAATTCACATGTTGCGAACTACAGAATGGCATTGGAAAAGCTTCCACTTTCAGTAGATCGGAAAAAATGGTCCAATGCAGAAAGGGAAAATCTTGTGAATGGAATAAAACGGCAATTCCAAGAAATGGTGCTGCAGATTTCAGTTGACCAAATCAGTGGGCTACAAGGATTTCCAGGAGATTCATATGATTTTGATAACATTCTTGATTCGATTAAAGAACTAGACATTACTCCTGAAAAGATCAGGGAGTTTTTGCCAAAAGTTAACTGGGACAAATTGGCTTCCATGTATATTGCGGGCCGCTCAGGTGCTGAATGTGAAGCAAGGTGGTTGAATTTTGAAGATCCTCTAATCAATCAGAATCCATGGACTGCAGTTGAGGATAAGAATCTTTTGTTTATTATTCAACAGAAGGGGATAAGTAACTGGATTGATATTGCAGTTTCATTGGGTACAAACAGAACTCCTTTCCAGTGCTTGTCTCGATACCAAAGGAGTTTAAATGCTTCCATATTAAAAAGGGAGTGGACCAAAGATGAGGATGAGAAACTCCGATCTGCGGTTGACACTTTTGGGGAGGGGGATTGGCAAGCAATAGCTTCTACTTTGGAAGGGAGGGCTGGTACACAGTGCTCTAATAGATGGAGAAAAGCTCTTGACCCAGCTAGGACAAAAAAAGGTTCTTTCACTTCAGATGAAGATAATCGCCTGAAAATAGCTGTAATGCTTTTTGGGCCTAAAAATTGGAACAGGAAGGCAGAATTTTTGCCTGGTCGAAATCAAGTTCAATGTAGAGAAAGATGGTTCAATTGTTTAGATCCTTCCTTGAGAAGGTGTGAATGGACCGAAGAGGAGGATTTGAGGCTAGAAATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGGATGTGTGCCTTCACGTACAGATAATGATTGCAGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCTTTGCTCCAAGAAGCCAGAAGGATTCAGAAAGCTGCTCTTATCAGCAACTTTGTTGATAGGGAATCAGAACGTCCTGCCCTTGGTCCTGCTGACTTTCGACCTTTACCCAATACAAATTTATCATGTGATGCCGAAAATTCAAAACCTGCTGCAAAAAGAGATATGAAATCAAGAAGGATACCAGTTTTAAGAAAGGAGAAGACTGTGAGTGGTGATAATTCAAAGAAGACTAAATCAAATACGCAGATGATTCCAGCCGATGACGCAACTGCCCAGGTGGAAATTGCAAACAAAAGGTCTTCTATTCCGATGGAGGTTAAATCTAGAACTTCTCGAAGAAAAGTAAATGGAGGTAGAGCTTATGCTAAGAAGAAAAGGGTTCCATTGAACAATGAGAAATGTGCGGAACAAAATTTGGACACCGAGAGCGTTGGGTTGCAGCTGAATGGTAGGGAATCAGAGAGGACGAATAGTGACTGCATCGAGACTGTTGATGAGAATGTTACAGATGTACCTGAGAACAGAGTTGCACAAAAGCTTTCAAGAAGGGATGTCTGTGTTTTAGATCAAGAAGATAATCAGAATTCTACAGGATCTTCTGGAGTGTCGGTGTTGTCAGAAACAATTAATGACGTGGACCATTATAATCCCTCCATTCTTCCAGATGCAGGCGTGCTGGATATTAGTATTACAAATGGGAATGATATCACGGAAAGGAGTAGCACCTTCAATCTGCCTTCAAAGAGCAAAGCAGACTTGGATTTGGCTGATAGTAACAGCTTCTCATCACCTTCTGGATGCTTGGAATTCAGGATAACTGATGGTGAAGGGGTCAATAGCCGTTCTGCTGCTAAAATTATGTCCAATGAGGTTGATATGGTTTCCAAGCACCAAAGTAGGAAGAAGAGAAGGACTAAAGAATCAAAAGAGAAGCACGTTTTGTTGGTTCCTTCTCAACAAGTCGTGCTGGAGAGATCAGTGACCAGGAAGCGTTGTCACAAGGATAGAGATGATGACACGCTTGCTTGTCTTCGTGATAAATCAAAGAAGAGAAAGCTTAAAGGTGCTGATATTAGTCAGTCAGGAACAATGAATGTAATTGAACCATTTCATACGGGTGCAGGGCGGCCCAATGATGCATGCCCAGTCTTATCCTCCATGGAAAATGGTAACTGTGGCCTACAGGCCTGCAGCTTGGAGGGAACCCCAACTGTCTTAGCTGGTGATAATGAGCCTGAAAGATCTGATTTGCCCAATAGGCATTTAGATAGACTATCACATAACGTTAGACGGGATCCAAGTGAAGTGGCTGATGACAGCACCCTTGCTTGCTTCCTTCAAAAGAAATTGAAGAGAACGACCCGTGACAAGAAAGCCAATGGTGATCCTCCTACCGTTTCCCTTGAAGTCGATGAGGATGATGGTGATCTTACTCTTGCTTTGTTTCTCAAGGATATTAAATCGAAGAAAAGGAAGCATCAAGCTCCTAGTTAA | 3333 | 42.84 | MSRRTQIEGGEKDISASEEDDEDGAFDEDMEILRRACKLVGTNPEQYINPLSSPVAGNHFLVGGECSGSKDGFDSDDFDDLELVQNIRNRFSISADNDDDECQPLSLKPLNTLPPVSPDEEEDDFETLRAIQRRFSAYESDSLTHNMDKPNHSCDRPADMESFNRTAADGETSLERKSMFNVGKASLPKAALVFVDAIKKNRSQQKFIRSKMIHLEARIEENKELRKRFKILKDFQTCCRRRIGCVLSQKKDPRVQLISAQKTGASKDSSKKDKQLSAMYYGPAENSHVANYRMALEKLPLSVDRKKWSNAERENLVNGIKRQFQEMVLQISVDQISGLQGFPGDSYDFDNILDSIKELDITPEKIREFLPKVNWDKLASMYIAGRSGAECEARWLNFEDPLINQNPWTAVEDKNLLFIIQQKGISNWIDIAVSLGTNRTPFQCLSRYQRSLNASILKREWTKDEDEKLRSAVDTFGEGDWQAIASTLEGRAGTQCSNRWRKALDPARTKKGSFTSDEDNRLKIAVMLFGPKNWNRKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAGCVPSRTDNDCRRRWKKLFPNEVPLLQEARRIQKAALISNFVDRESERPALGPADFRPLPNTNLSCDAENSKPAAKRDMKSRRIPVLRKEKTVSGDNSKKTKSNTQMIPADDATAQVEIANKRSSIPMEVKSRTSRRKVNGGRAYAKKKRVPLNNEKCAEQNLDTESVGLQLNGRESERTNSDCIETVDENVTDVPENRVAQKLSRRDVCVLDQEDNQNSTGSSGVSVLSETINDVDHYNPSILPDAGVLDISITNGNDITERSSTFNLPSKSKADLDLADSNSFSSPSGCLEFRITDGEGVNSRSAAKIMSNEVDMVSKHQSRKKRRTKESKEKHVLLVPSQQVVLERSVTRKRCHKDRDDDTLACLRDKSKKRKLKGADISQSGTMNVIEPFHTGAGRPNDACPVLSSMENGNCGLQACSLEGTPTVLAGDNEPERSDLPNRHLDRLSHNVRRDPSEVADDSTLACFLQKKLKRTTRDKKANGDPPTVSLEVDEDDGDLTLALFLKDIKSKKRKHQAPS | 1110 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 46996430 | 47006625 | + | evm.model.ptg000008l.404 | HCH8g1131 | 550229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1131 | 1110 | CDD | SANT | 460 | 502 | IPR001005 | - | |
HCH8g1131 | 1110 | Gene3D | - | 457 | 507 | - | - | |
HCH8g1131 | 1110 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
HCH8g1131 | 1110 | MobiDBLite | consensus disorder prediction | 638 | 669 | - | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 453 | 508 | IPR017930 | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-like domain profile. | 400 | 452 | IPR001005 | - | |
HCH8g1131 | 1110 | CDD | SANT | 513 | 555 | IPR001005 | - | |
HCH8g1131 | 1110 | SUPERFAMILY | Homeodomain-like | 508 | 604 | IPR009057 | - | |
HCH8g1131 | 1110 | Gene3D | - | 402 | 452 | - | - | |
HCH8g1131 | 1110 | Gene3D | - | 565 | 611 | - | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-like domain profile. | 506 | 557 | IPR001005 | - | |
HCH8g1131 | 1110 | Gene3D | - | 509 | 563 | - | - | |
HCH8g1131 | 1110 | Pfam | Myb-like DNA-binding domain | 563 | 607 | IPR001005 | - | |
HCH8g1131 | 1110 | Pfam | Myb-like DNA-binding domain | 406 | 450 | IPR001005 | - | |
HCH8g1131 | 1110 | Pfam | Myb-like DNA-binding domain | 458 | 503 | IPR001005 | - | |
HCH8g1131 | 1110 | Pfam | Myb-like DNA-binding domain | 511 | 557 | IPR001005 | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 510 | 557 | IPR017930 | - | |
HCH8g1131 | 1110 | CDD | SANT | 565 | 608 | IPR001005 | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-like domain profile. | 453 | 504 | IPR001005 | - | |
HCH8g1131 | 1110 | SMART | sant | 457 | 506 | IPR001005 | - | |
HCH8g1131 | 1110 | SMART | sant | 304 | 401 | IPR001005 | - | |
HCH8g1131 | 1110 | SMART | sant | 510 | 559 | IPR001005 | - | |
HCH8g1131 | 1110 | SMART | sant | 562 | 610 | IPR001005 | - | |
HCH8g1131 | 1110 | SMART | sant | 404 | 454 | IPR001005 | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-like domain profile. | 558 | 608 | IPR001005 | - | |
HCH8g1131 | 1110 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 558 | 612 | IPR017930 | - | |
HCH8g1131 | 1110 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 17 | 1072 | IPR051575 | GO:0000978(PANTHER)|GO:0001006(PANTHER)|GO:0019185(PANTHER)|GO:0042795(PANTHER)|GO:0042796(PANTHER) | |
HCH8g1131 | 1110 | SUPERFAMILY | Homeodomain-like | 437 | 506 | IPR009057 | - | |
HCH8g1131 | 1110 | SUPERFAMILY | Homeodomain-like | 381 | 453 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH8g0201 | HCH-Chr8:8317945 | HCH8g1131 | HCH-Chr8:46996430 | 1.50E-11 | dispersed | |
HCH8g1131 | HCH-Chr8:46996430 | HCH2g0779 | HCH-Chr2:51450946 | 1.30E-11 | dispersed | |
HCH8g1131 | HCH-Chr8:46996430 | HCH2g0778 | HCH-Chr2:51428840 | 3.50E-12 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34051 | PF00249 | Myb_DNA-binding | 4.90E-09 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g1131 | K09422 | - | csv:101216287 | 1145.18 |