Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1139 ATGGGAAAGTTTGTCTCTGAGAAAATGAAGCTCCTTCTAGCTTTGATTGCTTTGCAGTTCTGCTATGCAGGATTTCATATTGTATCGAGAGTCGCGTTAAACATCGGTGTCAGTAAAGTCGTCTATCCTGTTTATAGAAATGTCATTGCTCTAGCTTTGTTGAGTCCTTTTGCTTATTTCCTGGAGAAGAATGAAAGACCACCTCTTACTTTTTCTCTGTTGCTTCAGTTCTTCCTGCTAGCATTACTGGGGATCACAGCTAATCAAGGATTTTATCTCTTGGGGCTAAATTATGCATCTCCAACTTTTGCTTCCGCAATGCAAAACTCGGTTCCCGCGATTACTTTCGTCATGGCATCTGCTCTAAGGCTTGAGCAAGTAAACTTCAGGAGAAGAGATGGTTTGGCAAAACTTGTAGGAACCATTGGTAGTATTGGAGGTGCAAGTGTAATCACTCTCTACAGAGGCCCTCCCCTTCTCCACAATTACTTCCAAACCCAAGGAAGTGCCTTAGAGATTGATGACTCTACACTAAAAGTGCAAAATTTGAGATGGGGTTGTATATATCTGCTAGGACATTGCTTATCATGGGCCGGTTGGATGGTTCTTCAGGCTTCTGTGTTGAAAAAGTATCCAGCTAAACTAACAATCACTTCATACACATGCTTCTTTGGACTGATCCAATTCCTAGTCATTGCTGGCATCGTGGAAACAGACTATCAGTACTGGAAAATCCAATCTACAGAAGAGCTATTTACAATTTTATATGCTGGTGTTGTAGCCTCTGGGGTAGTAATCTCTCTCCAAACATGGTGCATCCACAAGAGTGGCCCTGTGTTTGTTGCTGTCTTCCAACCTTTGCAAACTCTTCTGGTAGCCGTTATGGCGTTCCTTATTCTCGGCGACCAGCTCTTCTCCGGAGGGGTTATTGGTGCAATTCTTATTTCATTTGGACTTTACTCAGTACTATGGGGAAAAAGTAAAGAAAAAGCATTGGAAGAGGAAGAAAAGTTGCTGAGACATCCCCTTCTTGATGCTCAAAATAGAGAAAAAGAAGGAAATGTTGTATCAGACATACCTTAA 1083 41.83 MGKFVSEKMKLLLALIALQFCYAGFHIVSRVALNIGVSKVVYPVYRNVIALALLSPFAYFLEKNERPPLTFSLLLQFFLLALLGITANQGFYLLGLNYASPTFASAMQNSVPAITFVMASALRLEQVNFRRRDGLAKLVGTIGSIGGASVITLYRGPPLLHNYFQTQGSALEIDDSTLKVQNLRWGCIYLLGHCLSWAGWMVLQASVLKKYPAKLTITSYTCFFGLIQFLVIAGIVETDYQYWKIQSTEELFTILYAGVVASGVVISLQTWCIHKSGPVFVAVFQPLQTLLVAVMAFLILGDQLFSGGVIGAILISFGLYSVLWGKSKEKALEEEEKLLRHPLLDAQNREKEGNVVSDIP 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47039148 47040994 - evm.model.ptg000008l.396 HCH8g1139 550237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1139 360 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020(InterPro)
HCH8g1139 360 Pfam EamA-like transporter family 11 130 IPR000620 GO:0016020(InterPro)
HCH8g1139 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 151 - -
HCH8g1139 360 PANTHER WAT1-RELATED PROTEIN 14 334 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
HCH8g1139 360 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0763 HCH-Chr4:4901402 HCH8g1139 HCH-Chr8:47039148 7.90E-113 dispersed
HCH8g1139 HCH-Chr8:47039148 HCH9g0974 HCH-Chr9:7272502 2.40E-63 dispersed
HCH8g1139 HCH-Chr8:47039148 HCH12g0160 HCH-Chr12:855011 2.80E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1139 - - - 0.0