Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1155 ATGGAGCTCAATTTCCAAACCCTCTTCTTCATTCTCATCTTTACAAACTTTGCTTCTCAAATATCATCATCATCATCATCTCTTAACCAAAAGTATGAGGATTGTGTGCCTAAAAAGTGTGGATATGGACCGGAAATAAGGTACCCCTTTTGGATAGAAGATTCCCACAAACCTTTTTGTGGATATCCAAATTTCAAAGTGAAATGCAATGATGGAAATTACTCAGTTCTTGAAATCTCAAATGAAGATTATATCATCAGCGATATTTTTTATCAAAACCAAACTTTTCTTTTGGCTAGTGCTGCAGTTTATGACAGGGACCAAGCATGTCCTTATCCGAGGAACAACATTAGCCTCATTAAATCATCATTTGGTTGTACTGAGGATGATGATGATTTCTTTTTCTTTCATGGTTGTCCATCAAACCCTCCTCCTGATTATGTTTATGAAGTAAAGTGTGGTAGCAATGGCACTCATTATTCTTTTGCTACTTTTCATAAGGATTTGTTGGAGATTAGTAAATATTCTTTCAAGTCATGTGAGTCTTGGGTTCGTGTGCCTATTAGAAAAAACCAGATTGTTGGTGTCGATGAATGGTTGAAATTGGATTATGTTAAAATTTTGAAGATGGGATTTGTTCTAAATTGGACTGCACATGACTGTGGAGGCTGTGAGAAAAGTGGTGGGCGTTGTGGATTTGAAAATAATGAGTTTCTTTGCTTATGTGGTGATGGACCAAATTTGACTAGCTGCAAACATGCTCAAAGGAGCAAAAGAAATAAAATTATCATAGGCACATGCGTTGGTTTTGGAAGCCTACTTTTAACCTTTGTGGCTTTATTCATCTGGTACCGATTGCGTAGGCGTCGCAACAAATCTTCTCACACACTGCCGTTTGTGCAACGAAGCATTCCCTCGGAACCGTCTTCTGTGCAAAAACTTGAGAATGGAGGTGCCTACTTGGGTATACACCTCTTCTCCTATAAAGAACTTGAGAAAGCCACGAACCACTTTGACTCAGCTAAAGAACTTGGTGATGGGGGTTTTGGCACCGTATACTATGGCTTACTCAAAGATGGGCGTGCCGTTGCTGTCAAACGCTTGTACGAAAACAATTTCAAGAGAGTTGAGCAGTTCATGAATGAAGTGCATATCCTTACTCGCCTGCGGCACCCGAATCTGGTTTCACTTTATGGTTGCACCTCCCGCCACAGTCGTGAGCTTTTGCTTGTGTATGAATATGTCGCCAATGGCACGGTAGCTGATCATCTTCATGGTCCACGAGCTAAGCCTGGTGAACTACCATGGCCTACTAGAATGAAGATTGCAATAGAGACTGCAAATGCATTGGTTTACCTTCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAATATTCTCCTTGACATTGACTGTTGTGTTAAAGTAGCAGATTTTGGACTGTCCCGGCTCTTCCCTCTCGACGTCACCCACGTTTCGACTGCTCCTCAAGGCACTCCTGGTTATGTTGATCCAGAGTACCACCAGTGCTACCAACTTACGGATAAAAGTGATGTTTTTAGCTTTGGGGTGGTATTGGTTGAACTTATATCTTCCAAGCCTGCTGTTGACATTACAAGGCATAGACATGAGATTAATCTGTTTAACATGGCTATCAACAAGATCCAAAACCGTGAATTGCCCGAGTTTGTTGATCCTTATCTTGGTTTCGAATCCGACCAAAGAATCAGAGAAATGATAACCAGCACAGCTGAGTTAGCATTTCGATGTCTGCAGAGTGCGAAAGATATGAGACCATCAATGGTGGAGGTTCTTGAAATTCTAGAAACTATACAAAATCAGAATAGCTGCAAAGAGAAGCAACAAGAGATCGACATTGCAGACGACGCCGTGTTGCTGAAGAATGGTTACGGTTCATCCCCACTTTCTCCCAGTTCTTTATCCGTTTCATGGGTTAGCAACTCCACAGCAACTAATGATACTGTCAGTAGTTAA 2001 41.18 MELNFQTLFFILIFTNFASQISSSSSSLNQKYEDCVPKKCGYGPEIRYPFWIEDSHKPFCGYPNFKVKCNDGNYSVLEISNEDYIISDIFYQNQTFLLASAAVYDRDQACPYPRNNISLIKSSFGCTEDDDDFFFFHGCPSNPPPDYVYEVKCGSNGTHYSFATFHKDLLEISKYSFKSCESWVRVPIRKNQIVGVDEWLKLDYVKILKMGFVLNWTAHDCGGCEKSGGRCGFENNEFLCLCGDGPNLTSCKHAQRSKRNKIIIGTCVGFGSLLLTFVALFIWYRLRRRRNKSSHTLPFVQRSIPSEPSSVQKLENGGAYLGIHLFSYKELEKATNHFDSAKELGDGGFGTVYYGLLKDGRAVAVKRLYENNFKRVEQFMNEVHILTRLRHPNLVSLYGCTSRHSRELLLVYEYVANGTVADHLHGPRAKPGELPWPTRMKIAIETANALVYLHASEIIHRDVKTNNILLDIDCCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLTDKSDVFSFGVVLVELISSKPAVDITRHRHEINLFNMAINKIQNRELPEFVDPYLGFESDQRIREMITSTAELAFRCLQSAKDMRPSMVEVLEILETIQNQNSCKEKQQEIDIADDAVLLKNGYGSSPLSPSSLSVSWVSNSTATNDTVSS 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47169559 47172293 + evm.model.ptg000008l.380 HCH8g1155 550253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1155 666 Gene3D Transferase(Phosphotransferase) domain 1 415 637 - -
HCH8g1155 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1155 666 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
HCH8g1155 666 FunFam Wall-associated receptor kinase-like 20 415 624 - -
HCH8g1155 666 Pfam Wall-associated receptor kinase C-terminal 161 245 IPR032872 -
HCH8g1155 666 SMART serkin_6 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1155 666 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 310 414 - -
HCH8g1155 666 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247(InterPro)
HCH8g1155 666 SUPERFAMILY Protein kinase-like (PK-like) 323 622 IPR011009 -
HCH8g1155 666 Pfam Protein kinase domain 340 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1155 666 Gene3D Phosphorylase Kinase; domain 1 312 414 - -
HCH8g1155 666 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 658 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
HCH8g1155 666 ProSiteProfiles Protein kinase domain profile. 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0970 HCH-Chr1:57875108 HCH8g1155 HCH-Chr8:47169559 4.10E-74 dispersed
HCH8g1155 HCH-Chr8:47169559 HCH13g0172 HCH-Chr13:1161633 2.00E-63 dispersed
HCH1g0749 HCH-Chr1:56295597 HCH8g1155 HCH-Chr8:47169559 3.80E-131 wgd
HCH3g0187 HCH-Chr3:1197687 HCH8g1155 HCH-Chr8:47169559 7.10E-170 wgd
HCH8g1155 HCH-Chr8:47169559 HCH9g0381 HCH-Chr9:2423616 2.60E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81725 PF00069 Pkinase 1.70E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1155 - - - 0.0