Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1157 ATGGCGACGCCGTTGACGGGGCTACAGCATAGAGACGGAGGCGGAGGAGTTGCGTTTTTGTCTAATTCTGTTAATAAATTGGATCCTTCTTCGCCTTCGTCATCGAGTGATTGTTTAAGAACTTCTGAACCTAAGTCTCCGATTCTGATTTTCCTCTTTTTTCATAAAGCAATTCGTAATGAGCTTGATTCGCTACACCGTCTCGCTATGGCTTTTGCTACCGGTCAGAGAGCTGATATTCGTCCGCTTTTTGAGCGCTACCATTTCTTGAGATCGATTTATAAGCATCACTCCAATGCTGAAGATGAGGTAATTTTTCCTGCACTTGATATTCGTGTGAAGAATGTGGCACAAACATATTCCCTTGAACACAAGGGTGAAAGCAGTCTATTTGATCATCTTTTTGAGCTTCTTAATTCTAATACGCAAAATGATGTAAGCTTTCCAAGGGAGTTAGCTTCCTGCACCGGTGCCCTAAAGACATCTGTTAGCCAACACATGGCTAAGGAAGAAGAGCAGGTATTTCCGTTGCTTATCGAAAAGTTCTCCTTGGAAGAGCAGGCATCTCTGGTTTGGCAGTTCTTGTGCAGTATCCCTGTGTATATGATGGCTCAATTCCTCCCTTGGCTTTCGTCATCTATTTCACCTGATGAATTTCAAGATTTACGGAAATGTTTGATCAAGGTAGTTCCAGAGGAAAAACTTCTTCAACAGGTCATATTTACTTGGATGGAAGCGAGAAGTTCTGCCAACATAACTAAAAGTTGCTTTGATGATTCTGAAGTTGGAGATCATAAAGATCCTATTACTGACACAACAAACCATCAAACAGAGAAAGTATATTGTGCTTGTGAATTGACCAGCCATGGGAAAAGAAAATGTTTGGAGTTAAGTTCTGATTCATCTGATTATGTGGTAACTCATCCAATAAATGAAATTCTGCTCTGGCACAATGCTATCAAAAGAGAGTTGAATGAGATAGCTGAGGAGGCTAGGAAGATTCAACTCTCTGGAAATTTTAGTAATCTATCAGCTTTTGATCAGAGGTTGCAATTCATTGCTGAAGTTTGCATTTTTCATAGTATTGCTGAGGACAAGGTCATCTTTCCTGCAGTAGATGGAGAGTTCTCTTTTCTCCAGGAACATGCTGAAGAAGAAAGTCAATTCAATGAGTTCAGGTGCTTGATTGAAAGTATCCAAAATGCGGGGGCTATTTCTACTTCAACAGCTGAATTTTACGTAAAATTGTGTTCTCATGCTGATCAAATAATGGATACCATTCAGAAGCACTTCAAAAACGAAGAAATTCAGGTTCTTCCACTTGCCAGAAAGCACTTTAGCTTCAAGAGACAGCAGGAATTATTGTATCAGAGCTTGTGCATGATGCCCTTGAAACTGATTGAACGTGTCTTGCCATGGCTGGTAGAATCATTGAAAGAAGATGAAGCTAGAGATTTTCTTAGGAACATGCAGTTGGCAGCTCCAGCACTAGATACCGCTCTGGTTACTCTCTTCTCTGGTTGGGCTTGTAAGGCTCGTAACAAAGGTTTGTGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCTGTTAGAAGGCTAACTGACATTGAAGAAGATATCGTTCAGTCATTTTGTTCATGTTCCTCTGCATTGAGTGCAAGGGAGGGTCGAAAATCAGATCCTGGAAATAATGTTAAAAGGCCAGCCATACGAAATGTCTCTGTATCATGCAAAAGTTGTGATAGCCAAGTTGCTTCAGGGACTGTTAATGTCCGGCAACAATGTTGTAGTGATCAGTCTTGCCTTGTCCCAGGTTTAGGAGTAAACAGCAATAATCTGGGGTTGAGTTCTATTTTCACATCCAAGTCTATACGTTCCTTATCTCCCAGCTCTTGTGCACCATCTCTTAATTCCAGCCTTTTTTCGTGGGAAACTGATAATACCTCTTCTGATGTTGGGTCTGCAGGACGTCCCATCGATACTATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTGGATGTTGAATCCGGAAAACTTAGTGTTTGTGATGGAGCTTTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTGTGGGGTTTATATAGAGCGCACAGTAATGCTGAAGATGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACATTGCATAATGTTAGTCACTCATATACACTGGACCATAAGCAGGAAGAAAAATTATTCGAGGACATTTCATGTGTTCTCTCTGAGATTTCACAGCTGCATGAAAGTTTGCATGAGGTTCCATCGGATGTCAATTTTTCTATGAGTGAGACTAGCTCTGTTAACATGGTGGGTAAGGATTGTTATAGAAAATACCATGAGCTGGCTACAAAGCTTCAAGGAATGTGCAAATCTATTAGAGTCACCCTAGATCAGCATATTTTCAGGGAAGAACTTGAGTTGTGGCCACTGTTTGGGAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCCGGATAATTGGGACAACGGGTGCTGAAGTTCTTCAGTCGATGTTGCCATGGGTAACGTCTGCACTTACTCAGGATGAACAGAATACTATGATGGATACATGGAAGCAGGCCACGAAGAACACCATGTTCAATGAATGGCTGAATGAATGCTGGAAAGGAACCGCCCCATCTACTTTACAGGGTGAGACATTGGAAGCTAGTGCTTCCCAAAAAGATTCTGGGATTATTGAGAGCTTGGATCAGAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTTCGCATGAACCAGAATGAACTGGAATCAGAAATCAGAAAGGTTTATCAGGATTCAACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAGAAGTAGAGGAAAATTCCAATGGTGAAGATGTAGCAGGACGCTCACCATCTTTTCGCTGCCCTGAGAAAGGAGTGTTTGGGTGTGAGCATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGCGGAAAGTTATTTACTTGTCGATTTTGTCATGATAATGTTAGCGATCACTCAATGGATAGGAAAGCAACATCAGAAATGATGTGTATGAGCTGTCTTACAATTCAAGCAGTTGGACCGATATGCACAACACCTTCTTGCAATGGACTTTCAATGGCAAAGTACTATTGTAATATTTGCAAGTTTTTTGATGATGAAAGGACTGTGTATCACTGCCCATTTTGCAACTTATGCCGTCTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGACTTGCAATTGTTGCCTTGGGATAAAGCTAGAGAGCCACAAGTGCCTGGAAAAAAGTTTAGAAACAAATTGTCCCATCTGTTGTGATTTCCTATTTACATCCAGTGCAACCGTTAGACCACTGCCCTGTGGTCATTACATGCATTCAGCTTGCTTTCAGGCATACACTTGCAGTCATTATACCTGTCCAATTTGCAGCAAGTCGTTGGGAGATATGGCTGTTTATTTTGGCATGCTTGACGCCTTGTTAGCTGCTGAGGTACTGCCGGAGGAGTACAGAGACCGTTGCCAGGACCTACTTTGCAATGACTGTGAGCGGAAAGGCACGTCTCGATTCCATTGGTTATATCATAAATGTGGGTTTTGTGGATCTTACAACACCCGGGTAATCAAGAATGATACCATCAATGCTGACTGCCCTTCTTCCAATCAATGA 3762 41.55 MATPLTGLQHRDGGGGVAFLSNSVNKLDPSSPSSSSDCLRTSEPKSPILIFLFFHKAIRNELDSLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESSLFDHLFELLNSNTQNDVSFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVYMMAQFLPWLSSSISPDEFQDLRKCLIKVVPEEKLLQQVIFTWMEARSSANITKSCFDDSEVGDHKDPITDTTNHQTEKVYCACELTSHGKRKCLELSSDSSDYVVTHPINEILLWHNAIKRELNEIAEEARKIQLSGNFSNLSAFDQRLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIESIQNAGAISTSTAEFYVKLCSHADQIMDTIQKHFKNEEIQVLPLARKHFSFKRQQELLYQSLCMMPLKLIERVLPWLVESLKEDEARDFLRNMQLAAPALDTALVTLFSGWACKARNKGLCLSSRAVGCCAVRRLTDIEEDIVQSFCSCSSALSAREGRKSDPGNNVKRPAIRNVSVSCKSCDSQVASGTVNVRQQCCSDQSCLVPGLGVNSNNLGLSSIFTSKSIRSLSPSSCAPSLNSSLFSWETDNTSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSVCDGAFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSEISQLHESLHEVPSDVNFSMSETSSVNMVGKDCYRKYHELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTMMDTWKQATKNTMFNEWLNECWKGTAPSTLQGETLEASASQKDSGIIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQAEVEENSNGEDVAGRSPSFRCPEKGVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMSCLTIQAVGPICTTPSCNGLSMAKYYCNICKFFDDERTVYHCPFCNLCRLGKGLGIDFFHCMTCNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEVLPEEYRDRCQDLLCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDTINADCPSSNQ 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47189389 47200844 + evm.model.ptg000008l.378 HCH8g1157 550255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1157 1253 ProSiteProfiles Zinc finger RING-type profile. 1133 1175 IPR001841 -
HCH8g1157 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1126 1177 IPR013083 -
HCH8g1157 1253 Pfam Ring finger domain 1132 1174 IPR001841 -
HCH8g1157 1253 CDD Hr-like 659 819 - -
HCH8g1157 1253 Gene3D nmb1532 protein domain like 652 885 - -
HCH8g1157 1253 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 692 1239 - -
HCH8g1157 1253 CDD Hr-like 312 440 - -
HCH8g1157 1253 Gene3D - 1205 1248 - -
HCH8g1157 1253 SMART ring_2 1133 1174 IPR001841 -
HCH8g1157 1253 ProSiteProfiles Zinc finger CTCHY-type profile. 1069 1132 IPR017921 -
HCH8g1157 1253 SUPERFAMILY RING/U-box 1132 1178 - -
HCH8g1157 1253 CDD RING-H2_Pirh2-like 1132 1175 - -
HCH8g1157 1253 Pfam CHY zinc finger 1004 1072 IPR008913 GO:0008270(InterPro)
HCH8g1157 1253 Gene3D nmb1532 protein domain like 313 458 - -
HCH8g1157 1253 Gene3D nmb1532 protein domain like 46 196 - -
HCH8g1157 1253 Pfam Zinc-ribbon 1180 1237 IPR039512 -
HCH8g1157 1253 SUPERFAMILY CHY zinc finger-like 998 1060 IPR037274 GO:0008270(InterPro)
HCH8g1157 1253 ProSiteProfiles Zinc finger CHY-type profile. 997 1066 IPR008913 GO:0008270(InterPro)
HCH8g1157 1253 Pfam Hemerythrin HHE cation binding domain 657 819 IPR012312 -
HCH8g1157 1253 Pfam Hemerythrin HHE cation binding domain 309 442 IPR012312 -
HCH8g1157 1253 Pfam Hemerythrin HHE cation binding domain 51 178 IPR012312 -
HCH8g1157 1253 SUPERFAMILY Zinc hairpin stack 1070 1126 IPR037275 -
HCH8g1157 1253 CDD Hr-like 50 176 - -
HCH8g1157 1253 FunFam Zinc finger protein-related isoform 1 1128 1177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1331 HCH-Chr8:48252633 HCH8g1157 HCH-Chr8:47189389 1.90E-240 transposed
HCH1g0757 HCH-Chr1:56377311 HCH8g1157 HCH-Chr8:47189389 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1157 K16276 - csv:101215023 2283.45