Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1163 ATGGCTGAATTCACTGCACCAGAATTATTACAAAGCTTGAAACCATCTTTTTCCTTCACTGATTTGATGGATCCAAACATGGAGTTAATGGGTCAATATGCAACTTCAAATCCAAGTGTTTTGGATGATAATCAAAGTATGAGTTTCCAAACCAACTTCTTGCCGTTTCCTAATGAGATTTTCTTCACTCATCAGCAAGTATCAGAATTTCCACAAAACTTGGCAGAAAACTTTCCAGCTTTGGATTCTAATTTGCCTACTACTCTAGCTGGGTCACTTGTTGCAGCTGCTGATGATGAATTCCATGAAATGAAGAAAAGGAAATCCATGGATGTATCAGAAAGTTGCTCTGGAATCTCTACTCCTCAAGTTTCTGAGACTGGATTCAAGAGAAAAAATGGCTCAGGAAGAGGGAAGAGAATGAAAAGCATTGAAAAAGAAGAAGATAAATCAACAAGAGAAGTTGTTCATGTAAGAGCTAGAAGAGGCCAAGCAACTGATAGTCATAGTTTAGCAGAAAGGGTGAGGAGAGGAAAAATCAATGAAAGATTAAGATGCTTGAAAGACATAGTCCCAGGATGCTATAAGACTATGGGCATGGCAGTCATGTTGGATGAGATTATTAATTATGTCCAATCTCTTCAGAATCAAGTGGAGTTCCTCTCCATGAAGCTAGCTGCAGCAAGCAATTTCTACGACTTTAACTCGGAGGCAGATGCTATATCAAAATTACAGAGGGCAAAGGCACATGAAGCAAAAGAGTTGGAGAGATTGATGAAATCAGAAGGATATGGAGGACTTGCTTGCTTCCACTCAAATTTGCCCATTTGA 831 38.99 MAEFTAPELLQSLKPSFSFTDLMDPNMELMGQYATSNPSVLDDNQSMSFQTNFLPFPNEIFFTHQQVSEFPQNLAENFPALDSNLPTTLAGSLVAAADDEFHEMKKRKSMDVSESCSGISTPQVSETGFKRKNGSGRGKRMKSIEKEEDKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASNFYDFNSEADAISKLQRAKAHEAKELERLMKSEGYGGLACFHSNLPI 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47231272 47232683 + evm.model.ptg000008l.372 HCH8g1163 550261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1163 276 MobiDBLite consensus disorder prediction 108 170 - -
HCH8g1163 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 230 IPR036638 GO:0046983(InterPro)
HCH8g1163 276 MobiDBLite consensus disorder prediction 138 170 - -
HCH8g1163 276 CDD bHLH_AtBPE_like 154 239 - -
HCH8g1163 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983(InterPro)
HCH8g1163 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 105 249 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH8g1163 276 Gene3D - 161 233 IPR036638 GO:0046983(InterPro)
HCH8g1163 276 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983(InterPro)
HCH8g1163 276 SMART finulus 170 220 IPR011598 GO:0046983(InterPro)
HCH8g1163 276 Coils Coil 241 261 - -
HCH8g1163 276 MobiDBLite consensus disorder prediction 113 130 - -
HCH8g1163 276 FunFam transcription factor BEE 3-like 161 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1163 HCH-Chr8:47231272 HCH8g1514 HCH-Chr8:49298340 8.10E-27 dispersed
HCH3g0174 HCH-Chr3:1135336 HCH8g1163 HCH-Chr8:47231272 8.70E-66 wgd
HCH8g1163 HCH-Chr8:47231272 HCH9g0370 HCH-Chr9:2337266 1.10E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34053 PF00010 HLH 4.70E-05 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1163 - - - 0.0