Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1172 ATGCGCATGAGTTGTAATGGATGTCGAGTTCTCCGCAAAGGTTGCAGCGAAAACTGCTCCATCAGACCCTGTCTCCAATGGATCAAAACCCCTCTCTCCCAAGCGAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCGTTAACCTTATCAATGCCGGTCCCGGCCATCTCCGACCAGCTATATTTAAATCTTTACTCTACGAGGCATGTGGTCGAATAGTAAACCCTATTTTCGGCTCCGCCGGTTTATTATGGTCCGGGAGCTGGCAACTTTGCCAAGACGCGGTGGAAGCGGTTCTCAAAGGCACACCGATCATCCCCATTTCCTCCGAAATGGCAGCGTCCCATGATATGAACCTTCCATTAAAATCCTGTGATATTCGTCATGTATCAAAAGACCATAATTCATCTTCCACGGCGGCGCTACGTAAGATCAAGACGCGGCGGCGGTTCAAGCGTTCGTCGGCGGTTAAAAGGCCGAAGCCAAAAGAAGAGATCTCGGTGACGGAGCTGAGTCATGGTCGCAGTAAGGAGTATGGCAGTGATGACGGGGACTGTTTGTCGGTGGAAACGGTAGAAGCTTCGGTGGGCCATGGTGGTGACGTGGAGTTGGAACTTACTTTGGGGTTCGGGAGTTGGTGTCCAGTCAGACGAGATGGGTGCTGA 678 52.06 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPLSQANATFFLAKFYGRAGLVNLINAGPGHLRPAIFKSLLYEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGTPIIPISSEMAASHDMNLPLKSCDIRHVSKDHNSSSTAALRKIKTRRRFKRSSAVKRPKPKEEISVTELSHGRSKEYGSDDGDCLSVETVEASVGHGGDVELELTLGFGSWCPVRRDGC 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47293041 47293992 + evm.model.ptg000008l.363 HCH8g1172 550270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1172 225 MobiDBLite consensus disorder prediction 162 187 - -
HCH8g1172 225 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
HCH8g1172 225 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
HCH8g1172 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 214 - GO:0010468(PANTHER)
HCH8g1172 225 MobiDBLite consensus disorder prediction 157 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0771 HCH-Chr1:56481577 HCH8g1172 HCH-Chr8:47293041 1.80E-56 wgd
HCH8g1172 HCH-Chr8:47293041 HCH9g0366 HCH-Chr9:2278680 4.10E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34055 PF03195 LOB 7.00E-22 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1172 - - - 0.0