Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1191 ATGACTTGGAGAAGAGTGTTGAAGTCCGTACAGGCACTTTTGGCCCACTCTTCACTCTTCTGTTTCACGCTCTTTCTCGTTCTCAAGCTCGATCATATCGTTTCCTTTACTTGGTGGGTTATATTTTTTCCACTTTGGACATTTCATGTGGTTGTTGCTCGAGGGAGGTTCTCATTACCTGCTCCGTCTCTTCCTCATAATCGCCATTGGGCACCGTGCCATGCGGTTGTTGCGACACCTTTGCTTATTGCATTCGAATTGCTTCTCTGTATATACCTCGAGAGCCTTTCTGTCTATGGTTTTGCAGCTGTGAACTTGAAGATTGTCTTTCTACCATTATTGGCATTTGAAATCATTATTTTAATAGATAATTTCAGGATGTGTAGGTCACTGATGCCTGGTGATGATGAAAGCATGAGTGATGAGGCAATATGGGAGACTCTTCCTCACTTTTGGGTTGCCATTTCCATGGTCTTCTTTGTTGCTGCTACAGTTTTCACCCTACTGAAGCTATCTGGGAATGTTGGTGCTCTTGGCTGGTGGGACTTGTTTATAAATTTTGGAATTGCAGAGTGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAATCCTGTGATTCATAGAAATTCTCGAACAAGGGAAAATTGTTCATCATCCACAATGGTTAGATATCTTGATTGGAACAGTGGTTTAATAGTTTATCCTGAGCAGGATCAAAATCAGGACAGCATATGTGGCCTTCAAGACATTGGTGGCCATGTTATGAAAATTCCCATAATTATTTTTCAAATCCTTCTCTGTATGTATTTAGAGGGAACACCTGGTAGTGCAAAGCACATTCCACTTCCTGCCCTTTTCTCCCCACTTTTTATTCTTCAAGGTGCTGCTGTTATATATGCTGCATCTAGGCTGTTAGAGAAAGTTGTACTTCTCTTAAGAGGTGGATCTGGCACGGCTTTGTATTTCAGTTTTTCTTCAAGGGCACATGCTTGCTTGGAGTTCTTTCATCATGGTTCAAGGTTGTTGGGATGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAAGCACGATTATTTCATGAGGGTTCATCCGGGTATAATACTTTTAGTGGATATCCTCCTGAGATTGTGAAGAAAATGCCTAAAAAAGATCTTGCAGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGAGAGCAGACGGAAATTACTAAATACAGTCAGCAAGAATTTGAAAGACTTCAAAATGAAAAGGTGTTATGTAGGATTTGTTTTGAGGGAGAAATTAGTGTGGTTCTTCTTCCGTGTAGGCATCGCATAGTGTGCAGTTCATGCTCCGAGAAGTGTAAAAAGTGCCCAATATGCCGCGTCTCGATCGAGGAACGATTACCTGTATATGATGTTTAA 1404 41.95 MTWRRVLKSVQALLAHSSLFCFTLFLVLKLDHIVSFTWWVIFFPLWTFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGNVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNSRTRENCSSSTMVRYLDWNSGLIVYPEQDQNQDSICGLQDIGGHVMKIPIIIFQILLCMYLEGTPGSAKHIPLPALFSPLFILQGAAVIYAASRLLEKVVLLLRGGSGTALYFSFSSRAHACLEFFHHGSRLLGWWSIDEGSREEQARLFHEGSSGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEGEISVVLLPCRHRIVCSSCSEKCKKCPICRVSIEERLPVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47378394 47383742 - evm.model.ptg000008l.344 HCH8g1191 550289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1191 467 SMART ring_2 420 454 IPR001841 -
HCH8g1191 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 465 IPR013083 -
HCH8g1191 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
HCH8g1191 467 FunFam Baculoviral IAP repeat containing 7 429 465 - -
HCH8g1191 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
HCH8g1191 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
HCH8g1191 467 SUPERFAMILY RING/U-box 411 462 - -
HCH8g1191 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
HCH8g1191 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1240 HCH-Chr10:44142643 HCH8g1191 HCH-Chr8:47378394 1.40E-180 dispersed
HCH6g0528 HCH-Chr6:25650488 HCH8g1191 HCH-Chr8:47378394 2.10E-37 dispersed
HCH10g1238 HCH-Chr10:44068284 HCH8g1191 HCH-Chr8:47378394 2.70E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1191 - - - 0.0