Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1200 ATGCATATATCAACGATGCCCCTTCACCCCCTTCTTCTCCTTCATCGCTTTCTTCGATTCCGATCTTCAATCGTTTTGAGGAGGTTTGATATGGAGCCGATGGACATAGTTGGAAAATCTAAAGAGGATGCTTCTCTTCCAAAGGCGACTATGACCAAAATTATTAAAGAGATGTTGCCCCCTGATGTTCGCGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTCGTATCATCCGAGTCCAATGAAGTTTGTGGCAGAGAAGAAAAAAGAACAATTGCACCTGAGCACGTTCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATTCCGCATATGAACAGCACAGGCTTGAAACTATGCAAGATTCCTTGAAAGGTGGTAAGTGGAGTAATGGAGCTGAGATGACCGAGGAAGAAGCCTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGGGCGAGGATGAATGGCAGCACAACTGCTCCGAAGCAGCCTGAGCCTGACCAAAGTTTAGAGAGCTAA 561 45.1 MHISTMPLHPLLLLHRFLRFRSSIVLRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREEKRTIAPEHVLKALEVLGFSEYIEEVYSAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSTTAPKQPEPDQSLES 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47441453 47443738 - evm.model.ptg000008l.335 HCH8g1200 550298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1200 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 109 IPR003958 -
HCH8g1200 186 MobiDBLite consensus disorder prediction 170 186 - -
HCH8g1200 186 Gene3D Histone, subunit A 34 174 IPR009072 GO:0046982(InterPro)
HCH8g1200 186 PANTHER PROTEIN DR1 HOMOLOG 31 184 IPR044255 -
HCH8g1200 186 FunFam Negative cofactor 2 beta 36 173 - -
HCH8g1200 186 MobiDBLite consensus disorder prediction 162 186 - -
HCH8g1200 186 SUPERFAMILY Histone-fold 42 171 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1200 K21751 - - csv:101214627 295.819
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1200 . 31 179 CCAAT-DR1 Transcription Factor Family AT5G08190 83.2 3.2e-63 238.0
HCH8g1200 . 31 182 CCAAT-DR1 Transcription Factor Family AT5G23090 81.8 2.3e-66 248.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34059 PF00808 CBFD_NFYB_HMF 1.60E-21 CL0012 HCH TF