Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1200 ATGCATATATCAACGATGCCCCTTCACCCCCTTCTTCTCCTTCATCGCTTTCTTCGATTCCGATCTTCAATCGTTTTGAGGAGGTTTGATATGGAGCCGATGGACATAGTTGGAAAATCTAAAGAGGATGCTTCTCTTCCAAAGGCGACTATGACCAAAATTATTAAAGAGATGTTGCCCCCTGATGTTCGCGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTCGTATCATCCGAGTCCAATGAAGTTTGTGGCAGAGAAGAAAAAAGAACAATTGCACCTGAGCACGTTCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATTCCGCATATGAACAGCACAGGCTTGAAACTATGCAAGATTCCTTGAAAGGTGGTAAGTGGAGTAATGGAGCTGAGATGACCGAGGAAGAAGCCTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGGGCGAGGATGAATGGCAGCACAACTGCTCCGAAGCAGCCTGAGCCTGACCAAAGTTTAGAGAGCTAA 561 45.1 MHISTMPLHPLLLLHRFLRFRSSIVLRRFDMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCGREEKRTIAPEHVLKALEVLGFSEYIEEVYSAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSTTAPKQPEPDQSLES 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47441453 47443738 - evm.model.ptg000008l.335 HCH8g1200 550298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1200 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 109 IPR003958 -
HCH8g1200 186 MobiDBLite consensus disorder prediction 170 186 - -
HCH8g1200 186 Gene3D Histone, subunit A 34 174 IPR009072 GO:0046982(InterPro)
HCH8g1200 186 PANTHER PROTEIN DR1 HOMOLOG 31 184 IPR044255 -
HCH8g1200 186 FunFam Negative cofactor 2 beta 36 173 - -
HCH8g1200 186 MobiDBLite consensus disorder prediction 162 186 - -
HCH8g1200 186 SUPERFAMILY Histone-fold 42 171 IPR009072 GO:0046982(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34059 PF00808 CBFD_NFYB_HMF 1.60E-21 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1200 K21751 - csv:101214627 295.819