Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1230 ATGGAAGGCAATAGCTATACTGATCCCTTTCGCAAAATTCTCTTTCAACGGCAATGCTGTTCTGCTCGACTACCGAAACTTGTACTCTTTGCTCTTCTGATCTTTACAGTCTTTTCTTCAGCAGGGGCTTACGACCCGCTGGATCCAAACGGAAACATAACTATCAAATGGGATATAGTCTCTTGGACGGCAGATGGATATGTTGCTTCGGTGATAATGAACAATTTTCAGATGTATCGGCACATCAATACACCAGGATGGACTCTAGGCTGGTCATGGGCCAAGAAAGAAGTAATATGGTCAATGGTGGGAGCTCAGACCACAGAGCAAGGGGATTGTTCCAAGTTCAAGGGAAACGTCCCTCATTGTTGCAAGAAAAATCCAGTAGTTGTTGATTTGCTCCCTGGTGTTCCTTACAACCAGCAATTCTCCAATTGCTGCAAGGGTGGCGTGTTGGCATCTTGGGGACAGGATCCAGCGGGGTCGGTCTCCGCCTTTCAGGTGAGTGTTGGACAAGCCGGCACTACTAACAAAACTGTAAAACTGCCAAAGAATTTTACCCTGCTCGGTCCAGGACTAGGCTACACTTGTGGCCCTGCAAAGGTTGTGCCTTCTACAGTCTTCCTCACCCCCGATCGCCGGCGGAAAACTCAAGCATTGATGACGTGGAATGTGACATGCACTTATTCACAATTCCTGGCCTCTAAGAACCCAAGTTGCTGTGTATCACTCTCAACTTTCTACAACGATACAATCACTTCTTGCCCCACCTGTTCATGTGGCTGCCAGAGCAAACATAACTGTATAAGGAGTGACTCTAAGCTATTGCACAAGGAAGGAATAAATACTCCTAAAAAGGATAACACACCATTACTGCAATGCACACATCACATGTGTCCTGTCCGAGTACACTGGCATGTGAAGCTTAATTACAAGGATTATTGGCGTGTGAAAGTCGCTGTTACTAACTTCAACTATAGGATGAACTACACACTGTGGACACTTGCAGTACAGCACCCAAATCTCAACAATGTTACTCAAGTTTTCAGTTTTGATTACAAGCCCCTTCTTCCCTATGAATCCATCAATGACACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGACCATTTGGAAACGTGCAATCTGAGGTGCTCATGAAGAAAGACGAGAATACTTTTACCTTCAAGCAGGGTTGGGCCTTCCCAAGAAAAGTATACTTCAACGGCGACGAATGTCAGATGCCACCACCTGAGTCATACCCTTTTCTACCGAACTTTGCTCATACAGAGTCTAGTGCAGTTACCAAATTAGCCACCGTCTTGCTTTTAACTCTATCGTTTTTGTGGTGTCAGTGA 1377 45.03 MEGNSYTDPFRKILFQRQCCSARLPKLVLFALLIFTVFSSAGAYDPLDPNGNITIKWDIVSWTADGYVASVIMNNFQMYRHINTPGWTLGWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKNPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPAGSVSAFQVSVGQAGTTNKTVKLPKNFTLLGPGLGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPSCCVSLSTFYNDTITSCPTCSCGCQSKHNCIRSDSKLLHKEGINTPKKDNTPLLQCTHHMCPVRVHWHVKLNYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLLPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDENTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNFAHTESSAVTKLATVLLLTLSFLWCQ 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47669485 47671822 + evm.model.ptg000008l.305 HCH8g1230 550328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1230 458 PANTHER PROTEIN COBRA 29 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH8g1230 458 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH8g1230 458 PIRSF COBRA 12 458 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0129 HCH-Chr3:823061 HCH8g1230 HCH-Chr8:47669485 1.40E-24 dispersed
HCH8g1230 HCH-Chr8:47669485 HCH8g1232 HCH-Chr8:47677733 6.20E-88 dispersed
HCH8g1230 HCH-Chr8:47669485 HCH8g1231 HCH-Chr8:47672489 1.20E-184 tandem
HCH10g0911 HCH-Chr10:11712351 HCH8g1230 HCH-Chr8:47669485 2.50E-224 transposed
HCH3g0128 HCH-Chr3:820126 HCH8g1230 HCH-Chr8:47669485 1.50E-174 wgd
HCH8g1230 HCH-Chr8:47669485 HCH9g0320 HCH-Chr9:2011021 1.10E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1230 - - - 0.0