Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1231 ATGAAGTCTCAATGCATCGCCGAGCTCACGAGCTTCGTCGCATTGATTTTATTTCTAATTTCAAGCTTCAGTTTTACTTCAACAGAAGCCTATGATGCACTTGATCCCAATGGGAATATCACAATCAAATGGGATGTTATGAGCTGGACTCCGGATGGTTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATATCGCCATATTCAAGCTCCAGGTTGGACATTGGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGAGCATGATGGGAGGCCAAACAACAGAGCAGGGAGACTGTTCAAGATTCAAAGGAGGTATTCCACATTGCTGCAAGAAGGATCCGACTGTTGTGGATTTATTGCCGGGAACTCCTTACAACCAGCAAATTGCAAATTGCTGTAAAGGTGGGGTGATAAACTCATGGGCCCAAGACCCCGACAATTCAGCGAGTTCATTTCAAGTCAGCGTAGGTGCTGCGGGAACGAGTAACAAAACTGTCAAACTCCCCAAGAACTTCACACTTAAAGCACCAGGACCTGGTTACACTTGTGGGCCAGCAAAGATTGTGAAAGCAAGCAAATTTGTTACTAAAGATACCAGAAGAGTCACTCAAGCTTTGATGACCTGGAATATTACATGCACATATTCACAATTCCTAGCGCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAACGACACCATAGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAGCAACATGACGGGTCCTGGAAGCTGTGTGGATCCAGATTCTCCACATTTAGCTTCAGTGGTGTCAACTCCTGATAAAGCCAATACACCCTTGGTTCAGTGTACCAGCCATATGTGCCCCATTCGAGTCCATTGGCATGTGAAACTCAATTACAAGGAATATTGGCGGGTGAAGATAACAATCACCAATTTCAATTACAGAATGAACTATTCACTCTGGAATCTTGTCGTACAGCATCCCAATTTTGATAATATAACTAAATTGTTCAGCTTTAACTACAAGTCATTAAGCCCATATGGTGACCTAAATGATACTGCCATGTTATGGGGAGTTAAGTTCTACAATGATTTCCTCTCGCAAGCAGGCCCTCTCGGTAATGTGCAGTCGGAGCTCCTATTCCAGAAGGACCAAAATACTTTTACTTTCGACAAGGGTTGGGCTTTTCCTAGAAGAATATATTTCAATGGTGATAACTGTGTAATGCCACCTCCAGATGCCTATCCGTATCTGCCAAATGCCAGTTCCAGACCAGTTATCTCTCTACTAATTCACCCAATTGTGACCATCTTAATATCTTTGGTAGTACTGTTGACTTCTGCACGATGA 1356 43.44 MKSQCIAELTSFVALILFLISSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPDNSASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKASKFVTKDTRRVTQALMTWNITCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQSNMTGPGSCVDPDSPHLASVVSTPDKANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLNDTAMLWGVKFYNDFLSQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPYLPNASSRPVISLLIHPIVTILISLVVLLTSAR 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47672489 47675363 - evm.model.ptg000008l.304 HCH8g1231 550329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1231 451 PIRSF COBRA 2 450 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
HCH8g1231 451 PANTHER PROTEIN COBRA 15 439 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH8g1231 451 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0911 HCH-Chr10:11712351 HCH8g1231 HCH-Chr8:47672489 1.00E-188 dispersed
HCH11g0834 HCH-Chr11:39128616 HCH8g1231 HCH-Chr8:47672489 7.30E-134 dispersed
HCH3g0128 HCH-Chr3:820126 HCH8g1231 HCH-Chr8:47672489 1.40E-217 dispersed
HCH7g0495 HCH-Chr7:3730450 HCH8g1231 HCH-Chr8:47672489 1.50E-115 dispersed
HCH8g1231 HCH-Chr8:47672489 HCH9g0320 HCH-Chr9:2011021 3.80E-215 dispersed
HCH8g1230 HCH-Chr8:47669485 HCH8g1231 HCH-Chr8:47672489 1.20E-184 tandem
HCH8g1231 HCH-Chr8:47672489 HCH8g1232 HCH-Chr8:47677733 2.80E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1231 - - - 0.0