Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1232 ATGAATTCTCAATGCTTGGCTTCTTCTTTTACTAGATCCTTGACCAAGCTTACGAGCTTCGTCTTCCTCATTCTGTTTCTACATTCATGCTTCAGTTTTACTTCATCTGAAGCCTATGATGCACGTGATCCCAATGGGAATATCACAATCAAATGGGATGTAATGAGCTGGACTCCGGATGGTTATGTTGCTGTCGTTACATTCTACAACTTCCAGAAATATCGTCGGGTTCAAGCTCCGGGTTGGACATTGGGGTGGACATGGGCAAAGAAGGAAGTAATTTGGGCCATCATGGGAGCCCAAGCAACAGAGCAGGGAGACTGTTCAAGATTCAAAGGAGGTATTCCACATTGCTGCAAGAAGGATCCGAGTATTGTGGATTTATTGCCAGGAGCTCCTTACAATCAGCAAATTGCAAATTGCTGCAAAGGTGGAGTGTTAAGCTCTTGGGGCCAAGATCCGTCCAATGCAGCAAGCGCATTTCAAGTTTCCGTCGGCCTTGCAGGAACAAGTAACAAAACTGTCAAACTCCCCAATAACTTCACCCTTAAAGCACCAGGGCCTGGATACACTTGTGGACCAGCAAGAATTGTGAAACCAACCAAATTTATTTCTGAAGATGGGAGAAGAGTCACTCAAGCTTTGATGACCTGGAATATTACATGCACGTATCACAAGCCCTAG 684 44.88 MNSQCLASSFTRSLTKLTSFVFLILFLHSCFSFTSSEAYDARDPNGNITIKWDVMSWTPDGYVAVVTFYNFQKYRRVQAPGWTLGWTWAKKEVIWAIMGAQATEQGDCSRFKGGIPHCCKKDPSIVDLLPGAPYNQQIANCCKGGVLSSWGQDPSNAASAFQVSVGLAGTSNKTVKLPNNFTLKAPGPGYTCGPARIVKPTKFISEDGRRVTQALMTWNITCTYHKP 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47677733 47683579 - evm.model.ptg000008l.303 HCH8g1232 550330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1232 227 PANTHER PROTEIN COBRA 24 225 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
HCH8g1232 227 Pfam COBRA-like protein 62 224 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1230 HCH-Chr8:47669485 HCH8g1232 HCH-Chr8:47677733 6.20E-88 dispersed
HCH8g1232 HCH-Chr8:47677733 HCH9g0320 HCH-Chr9:2011021 2.10E-97 dispersed
HCH8g1231 HCH-Chr8:47672489 HCH8g1232 HCH-Chr8:47677733 2.80E-109 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1232 - - - 0.0