Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1238 ATGTTAAAGAACTCAAAGGAAAAGGGGTTTCAAGCAAAGCAAGGAGTCAGTGATGGGAAAAAACACACCAATTTCTCAAAGCTGCCATCCGCCACCACCGCAGCTGCCAGTTCACGACAATGGTCTGCATTTAGAAACCCGAGAATCGTTCGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCACAGCAAAGTGTGCACCATAAGAGGTTTAAGAGACAGAAGAATAAGACTTTCAGTCCCCACAGCAATTCAACTCTATGATCTTCAAGACAAGCTGCGGCTTGGCCAACCCAGCAAAGTCATTGATTGGCTTCTTGAAGTCACTAAACTAGACATTGACAAGCTCCCTCCCCTCCAAATTCCTGCTGGATTTGCTCAGTTTCATCAGCAGATGCTTTTTCCTCATCATGATTCTTATTCTTCCAGTACTTCTTCACAATTTTCTCTCCCTCCTAGCTTCTTTGATGTGAAAGATTCAAGCCAATTCAAGGACATGGAAATTAGCCAAACATTGATGGGAAAATCAAAGCTTTGGGATCAAGCTGAAAGAGGAGGAAATAATCATGATCATTCTGAGAAAGGGAAATGGATCAATAATTCATCAAATGATCATAATCAAGTTGGAGATTATAATGAACAAGCATCAGTTTCAGCTCAGAAGCTATTTCCTATGGCCAATTCTTCTTCTTTACCAAATTACTTTCTGAATAATGCTGCAGCTTTCAATTATTACACTACTACTTCTGATCAGTTTGGAAATAATAATAATAATGGAGTATTTCCATCACCAATGGAAGGCCAAACAAGTTCTTCATCTGCATCTTCTGCATTCTTCTTCTGTCCCCCTGGATCTTCCAATCCATCAGCTGCAGTTTTTACTCCTTACCCTTCACTGACAAACCCATTTGAAAGCCATATCCAGTTCTTGAGCTCAAGTTCAGTTCATGGTTTTCCCAATTCATTCACGCCTGCTCTTCAACCTTTTAGCTCTCAAAATTTGAAACCCTCTGCAGGAAATTTCAACTTGAAGCAGCTTCTTCATTCAGAAAACAATGGTGGCTCTGGTAAAGATCAGGAGGCAGATGCTGGGAATTCATAG 1101 40.69 MLKNSKEKGFQAKQGVSDGKKHTNFSKLPSATTAAASSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLRLGQPSKVIDWLLEVTKLDIDKLPPLQIPAGFAQFHQQMLFPHHDSYSSSTSSQFSLPPSFFDVKDSSQFKDMEISQTLMGKSKLWDQAERGGNNHDHSEKGKWINNSSNDHNQVGDYNEQASVSAQKLFPMANSSSLPNYFLNNAAAFNYYTTTSDQFGNNNNNGVFPSPMEGQTSSSSASSAFFFCPPGSSNPSAAVFTPYPSLTNPFESHIQFLSSSSVHGFPNSFTPALQPFSSQNLKPSAGNFNLKQLLHSENNGGSGKDQEADAGNS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47724841 47725941 - evm.model.ptg000008l.297 HCH8g1238 550336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1238 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 331 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
HCH8g1238 366 Pfam TCP family transcription factor 58 198 IPR017887 -
HCH8g1238 366 MobiDBLite consensus disorder prediction 181 209 - -
HCH8g1238 366 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
HCH8g1238 366 MobiDBLite consensus disorder prediction 182 198 - -
HCH8g1238 366 MobiDBLite consensus disorder prediction 17 31 - -
HCH8g1238 366 MobiDBLite consensus disorder prediction 1 31 - -
HCH8g1238 366 MobiDBLite consensus disorder prediction 347 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1238 HCH-Chr8:47724841 HCH9g0355 HCH-Chr9:2205329 3.50E-09 dispersed
HCH8g1238 HCH-Chr8:47724841 HCH9g0307 HCH-Chr9:1900802 6.30E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34065 PF03634 TCP 4.80E-25 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1238 - - - 0.0