Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1238 ATGTTAAAGAACTCAAAGGAAAAGGGGTTTCAAGCAAAGCAAGGAGTCAGTGATGGGAAAAAACACACCAATTTCTCAAAGCTGCCATCCGCCACCACCGCAGCTGCCAGTTCACGACAATGGTCTGCATTTAGAAACCCGAGAATCGTTCGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCACAGCAAAGTGTGCACCATAAGAGGTTTAAGAGACAGAAGAATAAGACTTTCAGTCCCCACAGCAATTCAACTCTATGATCTTCAAGACAAGCTGCGGCTTGGCCAACCCAGCAAAGTCATTGATTGGCTTCTTGAAGTCACTAAACTAGACATTGACAAGCTCCCTCCCCTCCAAATTCCTGCTGGATTTGCTCAGTTTCATCAGCAGATGCTTTTTCCTCATCATGATTCTTATTCTTCCAGTACTTCTTCACAATTTTCTCTCCCTCCTAGCTTCTTTGATGTGAAAGATTCAAGCCAATTCAAGGACATGGAAATTAGCCAAACATTGATGGGAAAATCAAAGCTTTGGGATCAAGCTGAAAGAGGAGGAAATAATCATGATCATTCTGAGAAAGGGAAATGGATCAATAATTCATCAAATGATCATAATCAAGTTGGAGATTATAATGAACAAGCATCAGTTTCAGCTCAGAAGCTATTTCCTATGGCCAATTCTTCTTCTTTACCAAATTACTTTCTGAATAATGCTGCAGCTTTCAATTATTACACTACTACTTCTGATCAGTTTGGAAATAATAATAATAATGGAGTATTTCCATCACCAATGGAAGGCCAAACAAGTTCTTCATCTGCATCTTCTGCATTCTTCTTCTGTCCCCCTGGATCTTCCAATCCATCAGCTGCAGTTTTTACTCCTTACCCTTCACTGACAAACCCATTTGAAAGCCATATCCAGTTCTTGAGCTCAAGTTCAGTTCATGGTTTTCCCAATTCATTCACGCCTGCTCTTCAACCTTTTAGCTCTCAAAATTTGAAACCCTCTGCAGGAAATTTCAACTTGAAGCAGCTTCTTCATTCAGAAAACAATGGTGGCTCTGGTAAAGATCAGGAGGCAGATGCTGGGAATTCATAG 1101 40.69 MLKNSKEKGFQAKQGVSDGKKHTNFSKLPSATTAAASSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLRLGQPSKVIDWLLEVTKLDIDKLPPLQIPAGFAQFHQQMLFPHHDSYSSSTSSQFSLPPSFFDVKDSSQFKDMEISQTLMGKSKLWDQAERGGNNHDHSEKGKWINNSSNDHNQVGDYNEQASVSAQKLFPMANSSSLPNYFLNNAAAFNYYTTTSDQFGNNNNNGVFPSPMEGQTSSSSASSAFFFCPPGSSNPSAAVFTPYPSLTNPFESHIQFLSSSSVHGFPNSFTPALQPFSSQNLKPSAGNFNLKQLLHSENNGGSGKDQEADAGNS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47724841 47725941 - evm.model.ptg000008l.297 HCH8g1238 550336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1238 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 331 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
HCH8g1238 366 Pfam TCP family transcription factor 58 198 IPR017887 -
HCH8g1238 366 MobiDBLite consensus disorder prediction 181 209 - -
HCH8g1238 366 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
HCH8g1238 366 MobiDBLite consensus disorder prediction 182 198 - -
HCH8g1238 366 MobiDBLite consensus disorder prediction 17 31 - -
HCH8g1238 366 MobiDBLite consensus disorder prediction 1 31 - -
HCH8g1238 366 MobiDBLite consensus disorder prediction 347 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1238 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1238 HCH-Chr8:47724841 HCH9g0355 HCH-Chr9:2205329 3.50E-09 dispersed
HCH8g1238 HCH-Chr8:47724841 HCH9g0307 HCH-Chr9:1900802 6.30E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006954 1 1 2 2 3 1 2 1 1 1 1 1 1 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34065 PF03634 TCP 4.80E-25 No_clan HCH TF