Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1241 ATGACTAACACAGTAACTCCCGCTGGAATTTCCAAGATCTTAGAAAATCCATCTCCGGATTCTCCCTCAGATATCCCGGAAATCGTCATTCAGATCGTTGATCTCAAGGCCGCCGGCAATCGCTACATGTTTATGGCTAACGATGGGGATATGAAGCTCAAAGCTATACTCCCATCGAATCTCACTTCAGAGGTTATCTCTGGACGGATTCAAAATCTTGGTCTTATTCGAATTCTTGATTATTCTCTCAATGACATCCCAAACAAGTCAGAAAAGTATTTAATTGTGACAAAGTGTGAGATGGTTTCTACTCCTTTAGAAACGGAGATTAAATCTGAGGTTAAGACAGAGGAAGTGGATGTTTTGTTGAAACCAAAGCAAGAATCTGATGATAAGAGCGTGGTGAAAAATGGTGCTGGTATTTTCTTAAAACCTAAGCAAGAATTGGTTTCTAAATCAGCTGCTCAGATTGTACATGAACAGCGTACAAATATGCCACCTGCTGCACGGATGTCGATGACAAGGAGAGTTCATCCTCTTGTTTCCTTAAACCCTTACCAGGGAAGCTGGACTATCAAAGTCCGTGTTACAAACAAGGGAAACTTGCGAACTTACAAGAATGCTAGAGGAGAAGGTTGTGTTTTCAATGTAGAGTTGACTGATGAAGATGGTACACAAATACAGGCTACAATGTTCAATGAAGCTGCGAGGAAATTCTATGACAAGTTTGCTCTTGGAAAAGTTTATTACATTTCCAAGGGAAGTTTGAAAGTTGCTAATAAGCAATTTAAGACGGTGCAAAATGATTATGAAATGACTTTAAATGAGAATTCTGAAGTAGAGGAGGCAAGCAATGAAGCTGCTATTGTTCCTGAAACAAAGTTTAATTTTGTCAAGATTGATATGTTGGGTCCTCACGTGAATGGAAAGGATCTTGTTGATATTATTGGAGTTGTTCAAAGCGTTTCTCCCACAATGAGCATTCGAAGGAAGATCAACAATGAGACTGCTCCCAAACGTGATGTAACTATTGCTGATGATACGAAGAAGACGGTTGTCGTATCTTTGTGGAATGATCTTGCGACCACTGTGGGGCAGGAGTTGCTTGACATTGCTGATCAATCTCCTGTAATTGCACTAAAGCATCTCAAAGTAGGAGACTTCCAAGGTGTATCATTGTCAACAATAAGTAGAAGCTCAGTGTTAATAAATCCAGATATAGATGAAGCAAAAAAATTAAGATCATGGTATGATTCTGAGGGAAAAGCCATATCCATGTCATCTGTCAGCTCTGGCCTGAGCCCATCATCCAAGAGTGGGTCGAGGTCTATGTATTCTGACAGGGTCTCTTTGTCTCATATACTCGAAAACAAGTCTCTAGGAGAAGAAAAGCCAATGTTTTTCAGCATTAGAGCATACGTTAGCTTTATTAAGCCTGATCAAACAATGTGGTATCGGGCCTGTAAAACTTGTAACAAGAAGGTGACAGAAGCCATTGGATCTGGGTACTGGTGTGAAGGTTGCCAGAAAAATGATGAAGAATGCAGTTTAAGATACATAATGGTGGTGAGAGTTTCTGATGCAAGTAGTGAAGCTTGGCTCTCTGCATTCAATGAAGAAGCAGAAAGGATTATTGGGTGCTCTGCTGATGAGCTTGACCAGCTCAAATCACAGATTGGAGAGGAGAATTCCTATCAATTAAAACTAAAAGAAGCCACTTGGGTTCCCCATCTATTTCGGATTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTTAGGTCTGTTGCTCCAGTTGATTTTGCTGCTGAATCCAGATTTTTGCTTGAAGAAATAAACAAAATGAAAGTTTCTTAA 1872 39.85 MTNTVTPAGISKILENPSPDSPSDIPEIVIQIVDLKAAGNRYMFMANDGDMKLKAILPSNLTSEVISGRIQNLGLIRILDYSLNDIPNKSEKYLIVTKCEMVSTPLETEIKSEVKTEEVDVLLKPKQESDDKSVVKNGAGIFLKPKQELVSKSAAQIVHEQRTNMPPAARMSMTRRVHPLVSLNPYQGSWTIKVRVTNKGNLRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDKFALGKVYYISKGSLKVANKQFKTVQNDYEMTLNENSEVEEASNEAAIVPETKFNFVKIDMLGPHVNGKDLVDIIGVVQSVSPTMSIRRKINNETAPKRDVTIADDTKKTVVVSLWNDLATTVGQELLDIADQSPVIALKHLKVGDFQGVSLSTISRSSVLINPDIDEAKKLRSWYDSEGKAISMSSVSSGLSPSSKSGSRSMYSDRVSLSHILENKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDEECSLRYIMVVRVSDASSEAWLSAFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRISVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEINKMKVS 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 47744234 47747458 - evm.model.ptg000008l.294 HCH8g1241 550339
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1241 623 Coils Coil 538 558 - -
HCH8g1241 623 FunFam Replication protein A subunit 176 285 - -
HCH8g1241 623 Gene3D - 431 620 IPR012340 -
HCH8g1241 623 CDD RPA1_DBD_C 454 619 IPR047192 -
HCH8g1241 623 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
HCH8g1241 623 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
HCH8g1241 623 Gene3D - 5 113 IPR012340 -
HCH8g1241 623 SUPERFAMILY Nucleic acid-binding proteins 177 287 IPR012340 -
HCH8g1241 623 CDD RPA1_DBD_A 179 282 - -
HCH8g1241 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
HCH8g1241 623 PANTHER REPLICATION FACTOR A 1, RFA1 178 597 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
HCH8g1241 623 MobiDBLite consensus disorder prediction 1 20 - -
HCH8g1241 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
HCH8g1241 623 Gene3D - 176 285 IPR012340 -
HCH8g1241 623 FunFam Replication protein A subunit 289 428 - -
HCH8g1241 623 Gene3D - 290 430 IPR012340 -
HCH8g1241 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
HCH8g1241 623 CDD RPA1_DBD_B 312 418 - -
HCH8g1241 623 FunFam Replication protein A subunit 433 620 - -
HCH8g1241 623 NCBIfam replication factor-a protein 1 (rpa1) 5 619 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
HCH8g1241 623 FunFam Replication protein A subunit 4 114 - -
HCH8g1241 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
HCH8g1241 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1164 HCH-Chr6:46151274 HCH8g1241 HCH-Chr8:47744234 1.90E-83 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1241 K07466 - csv:101208545 1042.72