Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1275 | ATGCCGCTGTTTAGAAGTTTCTTCCACAGGAAGCCGCTGGATCATCTTCTTGAGGTCTCTGAAAGAGCCTACGTGTTTGATTGTTGCTACTCCAAGGATGTGTTGGAAGAAGAATACGGTATCTATCTGGATGGAATTGTAGAACAGTTACAGAGCCACTTCCCTGATGCTTCTTTCTTGGTTTTCAACTTCAAAGAAGGTGAGAGGCGAAGCCGATTTTCTGATGTACTGGCTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTGCTGTCATTAGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGTTGGTTGTCTCTGGAGGGTCAACAGAGTGTGCTACTGATGCATTGTGAAAGGGGAGGATGGCCTGTTCTTGCATTCATGCTAGCAGGTCTTTTGTTGTACCAGAATAAATACAATGAGGAGCAGAAGACTCTTGAAATGATCTACAACCTAGCTCCTAAGGAATTTCTCCAACTTTTGTCTCCTTTAAATTCTCAGGCTTCCCAGCTCAGATATCTTAAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCTGACACGCCTCTCGTTTTGGATGGTTTAATCCTTAGAGTTCTACCTCTCTTTGATGAGGGAAAAGGATGTAGGCCTGTTATTCGTGTCTATGGTCAAGACCCTTCAGCACCAGAAAACAGAAGTTCAAAGCTTTTATTTTCAACATCGAATAATAAAAAACATATCCGCAATTACCTACAGGCAGATTGTATGCTGATGAAAATGGATATTCATTGCCGCATTCAAGGGGATGTGGTTCTTGAATGTATACATTTTGATGAAGATCTAGTACGCGAGGAGATTATTTTCAGAGTTATGTTTCACACAGCATTTGTGAGATCAAACATTTTGATGCTGAACCGTGATGAAATTGATGTTTTATGGGATGCGAGGGATCAGTTTCCCAAGGACTTCAAAGCTGAGGCACTGTTTTTGGATGCTGATGCTGATGCTGTTCTGCCCTCTCTCACCACAGCCATAGCTGATGATGGAGATGATGATGCAAAATATATAGAAGCTGCTTCTCCCGATGAGTTTTTTGAGGTTGAAGAGATTTTCAGCAGTCTAATAGATGGGCAGGAAGTCAAGGGGACCTATGATCCTCCAGCATTTCAAGATTGTGCATCTGACGATGAAAATACGAAGCACGATAGAAATTCCACGATCAATCCATCAAAGACAATGCCATCCCCGCCCTCATCATTTAGTTGGCAGAATAATGAGATGTTATTGCCCTATCCTTCTGTACAACCTCCATTGGAGCCAAAATATTCTTCTTTATTTACTCCATCTTCTCCTTCTGCTCCTCTGGCTTCCACACATAAAGGTTTATTACCCCCGCCTCCACCTCCCCCTCCCCCTCCCCCACTTCCACCTTCTTCAATATATGGAGATCGAGTGCCATCACGTCCATCTAATTGCATTCATGTTGGTCCTCGTCCTCCACCTCCGATGAAAGGGGCATCTCCCTCGCCATGTTTAATGTGTGGAGCACCGCCTCCGCCGCGTTCAATGCATGGAGCATCTCCTCAGTCACCTCCTGCACCTTTGATGCACGGGCAACCTCCTCCTCCTCCTCCACCGGTTCCAATGCGTGGAGCTCCTCCTCCACCACCTCCATTCCTTAGGAGGAGGTCTTCCATTACATGGAGTAGGTGGGGGTTCAGCATTAGAGGTGCACCTCCTCCACCACCATCCCCTCCATTTTCTGGTGGACCTATTCATCCACCCCATCCTATGTGA | 1815 | 45.29 | MPLFRSFFHRKPLDHLLEVSERAYVFDCCYSKDVLEEEYGIYLDGIVEQLQSHFPDASFLVFNFKEGERRSRFSDVLAQYDMTVMDYPRQYEGCPLLSLEMIHHFLRSSESWLSLEGQQSVLLMHCERGGWPVLAFMLAGLLLYQNKYNEEQKTLEMIYNLAPKEFLQLLSPLNSQASQLRYLKYISRRNLGSDWPPSDTPLVLDGLILRVLPLFDEGKGCRPVIRVYGQDPSAPENRSSKLLFSTSNNKKHIRNYLQADCMLMKMDIHCRIQGDVVLECIHFDEDLVREEIIFRVMFHTAFVRSNILMLNRDEIDVLWDARDQFPKDFKAEALFLDADADAVLPSLTTAIADDGDDDAKYIEAASPDEFFEVEEIFSSLIDGQEVKGTYDPPAFQDCASDDENTKHDRNSTINPSKTMPSPPSSFSWQNNEMLLPYPSVQPPLEPKYSSLFTPSSPSAPLASTHKGLLPPPPPPPPPPPLPPSSIYGDRVPSRPSNCIHVGPRPPPPMKGASPSPCLMCGAPPPPRSMHGASPQSPPAPLMHGQPPPPPPPVPMRGAPPPPPPFLRRRSSITWSRWGFSIRGAPPPPPSPPFSGGPIHPPHPM | 604 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 47938034 | 47940277 | + | evm.model.ptg000008l.260 | HCH8g1275 | 550373 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 448 | 604 | - | - | |
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 388 | 430 | - | - | |
HCH8g1275 | 604 | PRINTS | Proline rich extensin signature | 471 | 492 | - | - | |
HCH8g1275 | 604 | PRINTS | Proline rich extensin signature | 501 | 517 | - | - | |
HCH8g1275 | 604 | PRINTS | Proline rich extensin signature | 543 | 568 | - | - | |
HCH8g1275 | 604 | PRINTS | Proline rich extensin signature | 438 | 454 | - | - | |
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 411 | 430 | - | - | |
HCH8g1275 | 604 | PANTHER | FORMIN-J | 1 | 415 | IPR051144 | - | |
HCH8g1275 | 604 | Pfam | C2 domain of PTEN tumour-suppressor protein | 198 | 335 | IPR014020 | - | |
HCH8g1275 | 604 | Gene3D | Protein tyrosine phosphatase superfamily | 9 | 191 | IPR029021 | - | |
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 448 | 462 | - | - | |
HCH8g1275 | 604 | Gene3D | - | 202 | 335 | - | - | |
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 582 | 604 | - | - | |
HCH8g1275 | 604 | SMART | PTEN_C2_2 | 197 | 337 | IPR014020 | - | |
HCH8g1275 | 604 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 19 | 186 | IPR029021 | - | |
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 499 | 567 | - | - | |
HCH8g1275 | 604 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 200 | 335 | IPR035892 | - | |
HCH8g1275 | 604 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
HCH8g1275 | 604 | MobiDBLite | consensus disorder prediction | 466 | 486 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH8g1275 | HCH-Chr8:47938034 | HCH8g1276 | HCH-Chr8:47946284 | 7.10E-201 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g1275 | K28090 | - | csv:101215105 | 646.351 |