Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1275 ATGCCGCTGTTTAGAAGTTTCTTCCACAGGAAGCCGCTGGATCATCTTCTTGAGGTCTCTGAAAGAGCCTACGTGTTTGATTGTTGCTACTCCAAGGATGTGTTGGAAGAAGAATACGGTATCTATCTGGATGGAATTGTAGAACAGTTACAGAGCCACTTCCCTGATGCTTCTTTCTTGGTTTTCAACTTCAAAGAAGGTGAGAGGCGAAGCCGATTTTCTGATGTACTGGCTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTGCTGTCATTAGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGTTGGTTGTCTCTGGAGGGTCAACAGAGTGTGCTACTGATGCATTGTGAAAGGGGAGGATGGCCTGTTCTTGCATTCATGCTAGCAGGTCTTTTGTTGTACCAGAATAAATACAATGAGGAGCAGAAGACTCTTGAAATGATCTACAACCTAGCTCCTAAGGAATTTCTCCAACTTTTGTCTCCTTTAAATTCTCAGGCTTCCCAGCTCAGATATCTTAAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCTGACACGCCTCTCGTTTTGGATGGTTTAATCCTTAGAGTTCTACCTCTCTTTGATGAGGGAAAAGGATGTAGGCCTGTTATTCGTGTCTATGGTCAAGACCCTTCAGCACCAGAAAACAGAAGTTCAAAGCTTTTATTTTCAACATCGAATAATAAAAAACATATCCGCAATTACCTACAGGCAGATTGTATGCTGATGAAAATGGATATTCATTGCCGCATTCAAGGGGATGTGGTTCTTGAATGTATACATTTTGATGAAGATCTAGTACGCGAGGAGATTATTTTCAGAGTTATGTTTCACACAGCATTTGTGAGATCAAACATTTTGATGCTGAACCGTGATGAAATTGATGTTTTATGGGATGCGAGGGATCAGTTTCCCAAGGACTTCAAAGCTGAGGCACTGTTTTTGGATGCTGATGCTGATGCTGTTCTGCCCTCTCTCACCACAGCCATAGCTGATGATGGAGATGATGATGCAAAATATATAGAAGCTGCTTCTCCCGATGAGTTTTTTGAGGTTGAAGAGATTTTCAGCAGTCTAATAGATGGGCAGGAAGTCAAGGGGACCTATGATCCTCCAGCATTTCAAGATTGTGCATCTGACGATGAAAATACGAAGCACGATAGAAATTCCACGATCAATCCATCAAAGACAATGCCATCCCCGCCCTCATCATTTAGTTGGCAGAATAATGAGATGTTATTGCCCTATCCTTCTGTACAACCTCCATTGGAGCCAAAATATTCTTCTTTATTTACTCCATCTTCTCCTTCTGCTCCTCTGGCTTCCACACATAAAGGTTTATTACCCCCGCCTCCACCTCCCCCTCCCCCTCCCCCACTTCCACCTTCTTCAATATATGGAGATCGAGTGCCATCACGTCCATCTAATTGCATTCATGTTGGTCCTCGTCCTCCACCTCCGATGAAAGGGGCATCTCCCTCGCCATGTTTAATGTGTGGAGCACCGCCTCCGCCGCGTTCAATGCATGGAGCATCTCCTCAGTCACCTCCTGCACCTTTGATGCACGGGCAACCTCCTCCTCCTCCTCCACCGGTTCCAATGCGTGGAGCTCCTCCTCCACCACCTCCATTCCTTAGGAGGAGGTCTTCCATTACATGGAGTAGGTGGGGGTTCAGCATTAGAGGTGCACCTCCTCCACCACCATCCCCTCCATTTTCTGGTGGACCTATTCATCCACCCCATCCTATGTGA 1815 45.29 MPLFRSFFHRKPLDHLLEVSERAYVFDCCYSKDVLEEEYGIYLDGIVEQLQSHFPDASFLVFNFKEGERRSRFSDVLAQYDMTVMDYPRQYEGCPLLSLEMIHHFLRSSESWLSLEGQQSVLLMHCERGGWPVLAFMLAGLLLYQNKYNEEQKTLEMIYNLAPKEFLQLLSPLNSQASQLRYLKYISRRNLGSDWPPSDTPLVLDGLILRVLPLFDEGKGCRPVIRVYGQDPSAPENRSSKLLFSTSNNKKHIRNYLQADCMLMKMDIHCRIQGDVVLECIHFDEDLVREEIIFRVMFHTAFVRSNILMLNRDEIDVLWDARDQFPKDFKAEALFLDADADAVLPSLTTAIADDGDDDAKYIEAASPDEFFEVEEIFSSLIDGQEVKGTYDPPAFQDCASDDENTKHDRNSTINPSKTMPSPPSSFSWQNNEMLLPYPSVQPPLEPKYSSLFTPSSPSAPLASTHKGLLPPPPPPPPPPPLPPSSIYGDRVPSRPSNCIHVGPRPPPPMKGASPSPCLMCGAPPPPRSMHGASPQSPPAPLMHGQPPPPPPPVPMRGAPPPPPPFLRRRSSITWSRWGFSIRGAPPPPPSPPFSGGPIHPPHPM 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47938034 47940277 + evm.model.ptg000008l.260 HCH8g1275 550373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1275 604 MobiDBLite consensus disorder prediction 448 604 - -
HCH8g1275 604 MobiDBLite consensus disorder prediction 388 430 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 471 492 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 501 517 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 543 568 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 438 454 - -
HCH8g1275 604 MobiDBLite consensus disorder prediction 411 430 - -
HCH8g1275 604 PANTHER FORMIN-J 1 415 IPR051144 -
HCH8g1275 604 Pfam C2 domain of PTEN tumour-suppressor protein 198 335 IPR014020 -
HCH8g1275 604 Gene3D Protein tyrosine phosphatase superfamily 9 191 IPR029021 -
HCH8g1275 604 MobiDBLite consensus disorder prediction 448 462 - -
HCH8g1275 604 Gene3D - 202 335 - -
HCH8g1275 604 MobiDBLite consensus disorder prediction 582 604 - -
HCH8g1275 604 SMART PTEN_C2_2 197 337 IPR014020 -
HCH8g1275 604 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 186 IPR029021 -
HCH8g1275 604 MobiDBLite consensus disorder prediction 499 567 - -
HCH8g1275 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 335 IPR035892 -
HCH8g1275 604 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
HCH8g1275 604 MobiDBLite consensus disorder prediction 466 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1275 HCH-Chr8:47938034 HCH8g1276 HCH-Chr8:47946284 7.10E-201 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1275 K28090 - csv:101215105 646.351