Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1275 ATGCCGCTGTTTAGAAGTTTCTTCCACAGGAAGCCGCTGGATCATCTTCTTGAGGTCTCTGAAAGAGCCTACGTGTTTGATTGTTGCTACTCCAAGGATGTGTTGGAAGAAGAATACGGTATCTATCTGGATGGAATTGTAGAACAGTTACAGAGCCACTTCCCTGATGCTTCTTTCTTGGTTTTCAACTTCAAAGAAGGTGAGAGGCGAAGCCGATTTTCTGATGTACTGGCTCAGTATGACATGACAGTTATGGACTATCCTCGGCAATATGAGGGGTGTCCTTTGCTGTCATTAGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGTTGGTTGTCTCTGGAGGGTCAACAGAGTGTGCTACTGATGCATTGTGAAAGGGGAGGATGGCCTGTTCTTGCATTCATGCTAGCAGGTCTTTTGTTGTACCAGAATAAATACAATGAGGAGCAGAAGACTCTTGAAATGATCTACAACCTAGCTCCTAAGGAATTTCTCCAACTTTTGTCTCCTTTAAATTCTCAGGCTTCCCAGCTCAGATATCTTAAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCTGACACGCCTCTCGTTTTGGATGGTTTAATCCTTAGAGTTCTACCTCTCTTTGATGAGGGAAAAGGATGTAGGCCTGTTATTCGTGTCTATGGTCAAGACCCTTCAGCACCAGAAAACAGAAGTTCAAAGCTTTTATTTTCAACATCGAATAATAAAAAACATATCCGCAATTACCTACAGGCAGATTGTATGCTGATGAAAATGGATATTCATTGCCGCATTCAAGGGGATGTGGTTCTTGAATGTATACATTTTGATGAAGATCTAGTACGCGAGGAGATTATTTTCAGAGTTATGTTTCACACAGCATTTGTGAGATCAAACATTTTGATGCTGAACCGTGATGAAATTGATGTTTTATGGGATGCGAGGGATCAGTTTCCCAAGGACTTCAAAGCTGAGGCACTGTTTTTGGATGCTGATGCTGATGCTGTTCTGCCCTCTCTCACCACAGCCATAGCTGATGATGGAGATGATGATGCAAAATATATAGAAGCTGCTTCTCCCGATGAGTTTTTTGAGGTTGAAGAGATTTTCAGCAGTCTAATAGATGGGCAGGAAGTCAAGGGGACCTATGATCCTCCAGCATTTCAAGATTGTGCATCTGACGATGAAAATACGAAGCACGATAGAAATTCCACGATCAATCCATCAAAGACAATGCCATCCCCGCCCTCATCATTTAGTTGGCAGAATAATGAGATGTTATTGCCCTATCCTTCTGTACAACCTCCATTGGAGCCAAAATATTCTTCTTTATTTACTCCATCTTCTCCTTCTGCTCCTCTGGCTTCCACACATAAAGGTTTATTACCCCCGCCTCCACCTCCCCCTCCCCCTCCCCCACTTCCACCTTCTTCAATATATGGAGATCGAGTGCCATCACGTCCATCTAATTGCATTCATGTTGGTCCTCGTCCTCCACCTCCGATGAAAGGGGCATCTCCCTCGCCATGTTTAATGTGTGGAGCACCGCCTCCGCCGCGTTCAATGCATGGAGCATCTCCTCAGTCACCTCCTGCACCTTTGATGCACGGGCAACCTCCTCCTCCTCCTCCACCGGTTCCAATGCGTGGAGCTCCTCCTCCACCACCTCCATTCCTTAGGAGGAGGTCTTCCATTACATGGAGTAGGTGGGGGTTCAGCATTAGAGGTGCACCTCCTCCACCACCATCCCCTCCATTTTCTGGTGGACCTATTCATCCACCCCATCCTATGTGA 1815 45.29 MPLFRSFFHRKPLDHLLEVSERAYVFDCCYSKDVLEEEYGIYLDGIVEQLQSHFPDASFLVFNFKEGERRSRFSDVLAQYDMTVMDYPRQYEGCPLLSLEMIHHFLRSSESWLSLEGQQSVLLMHCERGGWPVLAFMLAGLLLYQNKYNEEQKTLEMIYNLAPKEFLQLLSPLNSQASQLRYLKYISRRNLGSDWPPSDTPLVLDGLILRVLPLFDEGKGCRPVIRVYGQDPSAPENRSSKLLFSTSNNKKHIRNYLQADCMLMKMDIHCRIQGDVVLECIHFDEDLVREEIIFRVMFHTAFVRSNILMLNRDEIDVLWDARDQFPKDFKAEALFLDADADAVLPSLTTAIADDGDDDAKYIEAASPDEFFEVEEIFSSLIDGQEVKGTYDPPAFQDCASDDENTKHDRNSTINPSKTMPSPPSSFSWQNNEMLLPYPSVQPPLEPKYSSLFTPSSPSAPLASTHKGLLPPPPPPPPPPPLPPSSIYGDRVPSRPSNCIHVGPRPPPPMKGASPSPCLMCGAPPPPRSMHGASPQSPPAPLMHGQPPPPPPPVPMRGAPPPPPPFLRRRSSITWSRWGFSIRGAPPPPPSPPFSGGPIHPPHPM 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47938034 47940277 + evm.model.ptg000008l.260 HCH8g1275 550373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1275 604 MobiDBLite consensus disorder prediction 448 604 - -
HCH8g1275 604 MobiDBLite consensus disorder prediction 388 430 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 471 492 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 501 517 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 543 568 - -
HCH8g1275 604 PRINTS Proline rich extensin signature 438 454 - -
HCH8g1275 604 MobiDBLite consensus disorder prediction 411 430 - -
HCH8g1275 604 PANTHER FORMIN-J 1 415 IPR051144 -
HCH8g1275 604 Pfam C2 domain of PTEN tumour-suppressor protein 198 335 IPR014020 -
HCH8g1275 604 Gene3D Protein tyrosine phosphatase superfamily 9 191 IPR029021 -
HCH8g1275 604 MobiDBLite consensus disorder prediction 448 462 - -
HCH8g1275 604 Gene3D - 202 335 - -
HCH8g1275 604 MobiDBLite consensus disorder prediction 582 604 - -
HCH8g1275 604 SMART PTEN_C2_2 197 337 IPR014020 -
HCH8g1275 604 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 19 186 IPR029021 -
HCH8g1275 604 MobiDBLite consensus disorder prediction 499 567 - -
HCH8g1275 604 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 335 IPR035892 -
HCH8g1275 604 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
HCH8g1275 604 MobiDBLite consensus disorder prediction 466 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1275 K28090 - - csv:101215105 646.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1275 HCH-Chr8:47938034 HCH8g1276 HCH-Chr8:47946284 7.10E-201 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH12g1470 . 4 325 Protein tyrosine phosphatase (PTP) family AT1G71860 67.6 1.5e-123 439.5
HCH8g1518 . 36 928 Protein tyrosine phosphatase (PTP) family AT5G23720 63.3 2.7e-308 1054.7
HCH6g1620 . 25 172 Protein tyrosine phosphatase (PTP) family AT3G06110 56.8 2.6e-44 175.3
HCH7g0076 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 75.7 3.9e-70 261.2
HCH1g0714 . 101 378 Protein tyrosine phosphatase (PTP) family AT3G52180 71.6 2.8e-115 411.8
HCH1g0316 . 7 281 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 3.7e-115 411.4
HCH9g0145 . 143 590 Protein tyrosine phosphatase (PTP) family AT3G01510 68.3 3.8e-191 664.5
HCH2g0875 . 64 225 Protein tyrosine phosphatase (PTP) family AT2G32960 66.3 1.7e-71 266.2
HCH7g0082 . 43 226 Protein tyrosine phosphatase (PTP) family AT2G32960 67.0 2.8e-69 258.8
HCH6g1038 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 1.1e-97 353.6
HCH10g0513 . 18 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 5.0e-79 291.6
HCH10g0513 . 28 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.1e-46 180.3
HCH2g0875 . 62 225 Protein tyrosine phosphatase (PTP) family AT4G03960 76.8 1.7e-74 275.8
HCH7g0082 . 38 226 Protein tyrosine phosphatase (PTP) family AT4G03960 63.0 3.8e-66 248.1
HCH8g0272 . 12 167 Protein tyrosine phosphatase (PTP) family AT4G03960 59.1 1.4e-52 203.0
HCH8g0272 . 1 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 8.9e-79 290.0
HCH2g0875 . 61 209 Protein tyrosine phosphatase (PTP) family AT3G02800 64.4 2.3e-55 212.2
HCH7g0082 . 32 223 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 9.2e-52 200.3
HCH1g0486 . 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.1 8.1e-64 242.3
HCH9g0272 . 1 394 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 2.1e-156 548.9
HCH7g0674 . 8 589 Protein tyrosine phosphatase (PTP) family AT3G19420 67.6 9.4e-225 776.5
HCH14g0309 . 33 604 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.2e-199 691.0
HCH14g0309 . 35 604 Protein tyrosine phosphatase (PTP) family AT3G50110 60.7 8.6e-189 657.1
HCH7g0674 . 38 589 Protein tyrosine phosphatase (PTP) family AT3G50110 61.2 3.0e-186 648.7
HCH8g0927 . 1 1162 Protein tyrosine phosphatase (PTP) family AT5G58160 56.5 0.0e+00 1087.8
HCH8g1275 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 8.7e-116 415.6
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT3G10550 68.3 0.0e+00 1161.4
HCH13g0347 . 1 852 Protein tyrosine phosphatase (PTP) family AT5G04540 66.4 0.0e+00 1109.4
HCH2g1250 . 60 240 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 5.1e-71 264.6
HCH6g1102 . 12 322 Protein tyrosine phosphatase (PTP) family AT2G35320 62.4 1.5e-114 409.5
HCH9g0750 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.8 1.1e-279 959.1
HCH9g0750 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.9 4.5e-257 884.0
HCH9g0750 . 78 673 Protein tyrosine phosphatase (PTP) family AT5G28210 55.2 1.3e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001040 2 2 4 3 2 2 4 2 2 2 2 2 4 2 2 5 2 4 4 2 2 2 4 2 2 3 3 6 3 1 82