Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1276 ATGGCGCTGTTCAGAAGATTCTTTTACAGAAAGCCGCCGGATCGTCTTCTTGAGATCTCTGAAAGAGTCTACGTGTTCGATTGTTGCTTCTCCACGGATGTGTTGGAAGAAGAAGAATACAAGGTCTACCTGGATGGAATCGTAGCACAGTTACAGAGCCATTTTCCTGATGCTTCTTTCATGGTTTTCAACTTTAGAGAAGGTGAGAGGCGAAGCCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTTATGGACTATCCTCGGCAACATGAGGGGTGTCCCTTGCTGCCATTGGAGATGATCCACCACTTCCTTCGATCGAGTGAAAGTTGGTTGTCTTTAGAGGGTCAACAGAATGTGCTATTGATGCATTGTGAAAGGGGAGGATGGCCTGTTCTTGCATTCATGCTTGCAGGTCTTTTATTGTACCGGAAACAATACAGTGGGGAGCAGAAGACTCTCGAAATGATCTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCCTTTAAACCCTCAGCCTTCCCAGCTCAGATATCTTCAATACATTTCCAGGAGAAATTTAGGTTCTGATTGGCCTCCATCTGATACACCTCTCGTTTTGGATTGTTTAATTCTTAGAGTTCTACCTCTTTTTGATGGGGGAAAAGGATGTAGGCCTGTTGTTCGTATCTATGGTCAAGACCCCTCAGCACCAGCCAACAGAAGTTCAAAGCTTTTATTTTCAACGTCGAATAAGAAAAAACATATCCGCAACTACCTACAGGCAGAATGTATGCTGGTGAAAATTGATATTCATTGCCGTGTTCAAGGGGACGTGGTTCTTGAATGCATCCATTTGGATGAAGATCTAGCACGGGAGGAGATGATGTTCAGAGTTATGTTTCACACAGCATTTGTGAGATCAAACATTTTGATGCTGAACCGTGATGACATTGATGTTTTATGGGATGCGAGGGATCAGTTTCCCAAGGACTTCAAAGCTGAGGCACTGTTTTTGGATGCTGATGCTGTTCTGCCCACTCTCACTACAGCCCTAGTTGATGATGGAGACGATGATGCAAACTATATAGAAGCTGCTTCTCCCGATGAGTTTTTTGAGGTTGAAGAGATTTTCAGCAGTGTAATAGATGGGCAGGAAGCCAAGGGGGCCTATGATCCTCAAGTGGTCAATCATGTAGAACAAAAAGAAGATTGGAAGGAGGATTGGGATCCTCCAGCATTTCAAGATTGTGCATCTGACGATGGAAATAAGCATGATAAGAAGTCAGATTATGACGCCGTGAAGGACATTACTGTGGATGATGTGAAGTATAAACTGGATGAAAAGATGTACTCTGATCTTAATGCAGTTAAGGATATTGCGGTAGATGATGGGGATGTCAAGTCAAATTCCTTCACGGTTGCTTCTAATCTCCTGGCACATGTGAAAACTCAGGAGTTGGCAGATGATGCTTTTGAGAAATTTGAAGAAATAGATGATAAGGATGAAGAAAGTGATACTATACCTGATATGTTAGAACACAGGGTTCTACAAAAAAAGTTGAGTTCTGATGGTTCTAGACAAAAGTATGAAAAATTGCAAACATCAGGCCCCAAGAAGCAGTCTACTTCAGCTGCAAAACCGACCATTGATATTGGTTTGGCTAAACAGAAAGTCAAACAGCAAGAGACTCAGGGTTTTTCTGCCAAACAAGCAAAGCCAAATGCTGTTTCTAGGTGGATCCCTCCAAACAAAGGCTCGTATACGAATTCTATGCATGTTTCCTACCCACCATCAAGATATAACAGTGCTCCAGCCGCTTTTGCAAGTATTGCTCTGTCAAAGGATTTAAATGCCAATTTCAAATCAAAGGTTGTCACTGCCCTCGAGTCTCTGGTTGCTGCAGATGTTATTAATGAACGAAAAAGTAATAAAGTGGATGGTGTTAAGTCTTCGCATTCTGCACCAGCGGCACTAATGCTTGATCCACCTTCTCCAGTTGAGTCAATTGAGGGGACATATTCCTCCTCTCAACCTTCAAAACTACCAAGTATTGATCCACAACTTGAAGTGCCTCCTCCACCCTTGGGTACACCACTTCCATCTCCACATTTCCCATTAGTCCCGGGGGCAAATGCAACACCTCCCCCAGCCCCCCCACCCCCTCCGCTTCATCATATGGTTTCAATAAACTCTGCTTCACCATTTTCTACATCTCCAAAACCACTATCCACCAGTAATTCATCAAAGACGGTGCCGCCCCCGCCTCCACCTCCGCCTCTCTTCATGGGCATGCCATCTACATTAAAACATATTGAAAGCACTTCTGTACCTACTCTATCTCCTCCATTAGCCCCTTTTGCTTCTACAGATAAAAGTTTACCCCCACCCCCACCCCCACCCCCACCCCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCACCTCCTCCAATGTATGGAGGCAGAGTGCCACCACCTCCATCTAGTTCCATTTTTGAGGCACCTCCACCTCCTCCACCACCACCTCCTCCACCACCACCTCCTCCACTACCACCTCCTCCACTACCACCATCTAGTTCCATTTATGGAGCACCTCCACCTCCTCCACCACCACCTCCTCCACTACCACCATCTAGTTCCATTTATGGAGCACCTCCACCTCCTCCACCACCACCTCCTCCACTACCACCATCTAGTTCCATTTATGGAGCACCTCCACCACCACCTCCTCCTCCTCCACTACCATTATCTAGTTCCATTTATGGAGCACCACCACCACCACCATCTAGTTTCATCAATGAAGCACCTCCACCTCCACCTCCACCTCCACCTCCACCACCTTCAATGCATCAAGCACCTCCCCCACCTTTGATATATGGGCACCCACCTCCTCCACCCCCTCCAATGAGTAGAGCTCCGCCCCCACCACCTCCCCCACCTTTGATATATGGGCAGTCTCCTCCTCCTCCTCCTCCGCCCCCTCCAATGTGTGGAGCACCTCCCCCACCACCTCCCCCACCACCTCCCCCACCTTTGTTATATGAGCAGCTCCCTCCAATGCGTGGAGCGCCTCCCCCGCCCCCTCCCCCTCCAATGCTTGGTGCTCCTCCTTCTTTGATACCTCCATTGCGAGGAGCACCACCTCCGCCGCCCCCTCCAATGCGGGTTGGAGCTCCCCCTCCGCCACCCCCTCCAATGTGGGGTGGAGCACCACCTCCGCCACCCCCTCCAATGCATGGAGTGCCTCCACCACCTCCACCTCCAATGGGTGGAGCACCTCCTCCACCGCCACCTCCAATGCGTGGAGCACCTCCACCACCGCCACCTCCAATGCGTGGAGCACCTCCACCACCGCCACCTCCAATGCGTGGAGCACCTCCACCACCACCACCTCCAATGGGTGGAGCTCCTCCACCACCACCTTCAATTCGTGGAGCTCCTCCTCCTCCGCCTCCTCCATATGGAATCGGAAAAGCCCCACCACCACCTCCTCCACCTGGAATTGGTGGAGCCCCACCACCTCCTCCTCCTCCCGGAGGTCGTGCTCCAGCCCCTCCTAGACTTCCTGGTGGTGCACCTCCTCCACCTCCACCCCTGGGTGCCAGAGGGGCAAATGCTGCACCTGACCCAAGAGGGTTGTCCACTGGAAGAGGGCGTGGGCTTTCACGTCCAACTGCTACAGCACCTCGAAGGTCCTCTTTAAAGCCTCTACATTGGAGCAAAGTGACGAGGGCACTGCAAGGGAGTTTGTGGGAAGAATTACAAAGATTTGGAGAGCCTCAAATTGCACCGGAGTTTGACGTATCCGAGTTAGAGACTCTGTTTTCTGCAAATGTTCCAAAACCTGCTGATAAATCTGGAGGGCGAAGGAAGTCGGTTGGATCCAAAACTGACAAAGTTCACCTGGTTGATCTCCGGAGAGCAAATAACACCGAAATTATGCTCACGAAAGTTAAGATGCCTCTTTCTGATATGATGGCTGCAGTGCTGGCAATGGACGAGTCGGTATTAGATGTTGATCAGGTGGAAAATCTCATAAAGTTTTGTCCTACAAAGGAGGAGATGGAACTTCTTAAGGGATACACTGGTGATAAGGGAACCCTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTAGAGTAGAGTCCAAGTTGAGAGTATTTTCTTTCAAGATTCAGTTTGGCTCTCAGATATCAGAATTTAAAAAGAGTTTAAATACTGTGAACTCTGCATGTGATGAGGTTAGGAATTCTGCCAAACTCAAGGAGATTATGAAGAAAATTCTTTATCTTGGGAATACATTGAACCAAGGAACAGCAAGGGGTTCTGCAGTTGGCTTCAAGTTGGACAGTCTGTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACACTGATGCATTATCTTTGCAAGGTCCTTGCTTCTAAGACACCAGCTCTCCTTAATTTTCATTTGGACTTGGGAAGTCTTGAGCCAGCGACTAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGACTAGAAAAGGTTAAGCAGGAGCTTGTTGCATCTGAAAGTGATGGTCCAGTCTCTGAAGTTTTTCGCAAGACATTGAAAGGATTCGTTGCTATAGCTGAGACAGAGGTGGTATCTGTGTCAAATCTATACTCTGTGGTGGGTAGGAATGCAGATGCACTTGCACTGTATTTTGGCGAGGACCCGGCTCGTTGTCCATTTGAGCAGGTTACTGCAACACTCTTAAATTTTTTGAGGTTATTCCGCAAAGCCCATGAAGAGAATTGCAAACAGGCTGAATTGGAGAGGAAAAAAGCCGAAAAGGAGGCTGAAATGGAGAAAGCCAAGGGAATTAGCCTTACGAAGAAGAGTGTGAAGTAG 4929 48.04 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEEEYKVYLDGIVAQLQSHFPDASFMVFNFREGERRSQISDVLTQYDMTVMDYPRQHEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMIYKQAPKELLHLLSPLNPQPSQLRYLQYISRRNLGSDWPPSDTPLVLDCLILRVLPLFDGGKGCRPVVRIYGQDPSAPANRSSKLLFSTSNKKKHIRNYLQAECMLVKIDIHCRVQGDVVLECIHLDEDLAREEMMFRVMFHTAFVRSNILMLNRDDIDVLWDARDQFPKDFKAEALFLDADAVLPTLTTALVDDGDDDANYIEAASPDEFFEVEEIFSSVIDGQEAKGAYDPQVVNHVEQKEDWKEDWDPPAFQDCASDDGNKHDKKSDYDAVKDITVDDVKYKLDEKMYSDLNAVKDIAVDDGDVKSNSFTVASNLLAHVKTQELADDAFEKFEEIDDKDEESDTIPDMLEHRVLQKKLSSDGSRQKYEKLQTSGPKKQSTSAAKPTIDIGLAKQKVKQQETQGFSAKQAKPNAVSRWIPPNKGSYTNSMHVSYPPSRYNSAPAAFASIALSKDLNANFKSKVVTALESLVAADVINERKSNKVDGVKSSHSAPAALMLDPPSPVESIEGTYSSSQPSKLPSIDPQLEVPPPPLGTPLPSPHFPLVPGANATPPPAPPPPPLHHMVSINSASPFSTSPKPLSTSNSSKTVPPPPPPPPLFMGMPSTLKHIESTSVPTLSPPLAPFASTDKSLPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPPMYGGRVPPPPSSSIFEAPPPPPPPPPPPPPPPLPPPPLPPSSSIYGAPPPPPPPPPPLPPSSSIYGAPPPPPPPPPPLPPSSSIYGAPPPPPPPPPLPLSSSIYGAPPPPPSSFINEAPPPPPPPPPPPPSMHQAPPPPLIYGHPPPPPPPMSRAPPPPPPPPLIYGQSPPPPPPPPPMCGAPPPPPPPPPPPPLLYEQLPPMRGAPPPPPPPPMLGAPPSLIPPLRGAPPPPPPPMRVGAPPPPPPPMWGGAPPPPPPPMHGVPPPPPPPMGGAPPPPPPPMRGAPPPPPPPMRGAPPPPPPPMRGAPPPPPPPMGGAPPPPPSIRGAPPPPPPPYGIGKAPPPPPPPGIGGAPPPPPPPGGRAPAPPRLPGGAPPPPPPLGARGANAAPDPRGLSTGRGRGLSRPTATAPRRSSLKPLHWSKVTRALQGSLWEELQRFGEPQIAPEFDVSELETLFSANVPKPADKSGGRRKSVGSKTDKVHLVDLRRANNTEIMLTKVKMPLSDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKGTLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQISEFKKSLNTVNSACDEVRNSAKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLASKTPALLNFHLDLGSLEPATKIQLKSLAEEMQAIIKGLEKVKQELVASESDGPVSEVFRKTLKGFVAIAETEVVSVSNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFLRLFRKAHEENCKQAELERKKAEKEAEMEKAKGISLTKKSVK 1642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47946284 47959036 + evm.model.ptg000008l.259 HCH8g1276 550374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1276 1642 MobiDBLite consensus disorder prediction 517 545 - -
HCH8g1276 1642 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
HCH8g1276 1642 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1181 1624 - -
HCH8g1276 1642 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 787 1211 - -
HCH8g1276 1642 SMART PTEN_C2_2 198 338 IPR014020 -
HCH8g1276 1642 Gene3D - 205 336 - -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 747 762 - -
HCH8g1276 1642 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
HCH8g1276 1642 PRINTS Proline rich extensin signature 685 701 - -
HCH8g1276 1642 PRINTS Proline rich extensin signature 736 757 - -
HCH8g1276 1642 PRINTS Proline rich extensin signature 793 818 - -
HCH8g1276 1642 PRINTS Proline rich extensin signature 708 720 - -
HCH8g1276 1642 FunFam Formin-like protein 1230 1616 - -
HCH8g1276 1642 Coils Coil 1605 1634 - -
HCH8g1276 1642 CDD PTP_PTEN-like 16 190 - -
HCH8g1276 1642 Coils Coil 1511 1535 - -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 643 1243 - -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 1617 1636 - -
HCH8g1276 1642 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 1617 1642 - -
HCH8g1276 1642 Gene3D Formin, FH2 domain 1230 1616 IPR042201 -
HCH8g1276 1642 SMART it6_source 712 1640 IPR015425 -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 667 682 - -
HCH8g1276 1642 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1232 1630 IPR015425 -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 526 545 - -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 728 746 - -
HCH8g1276 1642 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 684 724 - -
HCH8g1276 1642 PANTHER FORMIN-J 1134 1630 IPR051144 -
HCH8g1276 1642 MobiDBLite consensus disorder prediction 767 781 - -
HCH8g1276 1642 Pfam Formin Homology 2 Domain 1237 1604 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0414 HCH-Chr12:2400867 HCH8g1276 HCH-Chr8:47946284 6.90E-255 dispersed
HCH8g0927 HCH-Chr8:45586913 HCH8g1276 HCH-Chr8:47946284 4.90E-230 dispersed
HCH8g1275 HCH-Chr8:47938034 HCH8g1276 HCH-Chr8:47946284 7.10E-201 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1276 K28090 - csv:101215105 1125.54