Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1279 | ATGGGGGGAGAGATTCATGGGCCATCAAAGCCTCGAATTCCCTTCCCCTTCTCCTCCCTTTTCATGTTTTTGTTTTTTTTTTTTTGCCTCATAGGCCTCTCTTCTGCCAAAAGATCATCCTCTATCATCTTTTCTCCTCAAGATAATTATTTGATTGACTGTGGCTCGTTGCAGCCTACCCGTCTCAATGACGGCCGCACTTTTAAGTCCGATCGTGAATCGACATCTCTCCTTTCTACAAATGAAGATGTGCAGATTTCTGTTGATTCCATTCCCATCAATTCTACTTGGCCTTCTTTGCCTTTGTTTCATACTGTCAAGATTTTCCCTGATGCATCCACCTACACTTTCTATATTTCTCAGCCCGGACGGCATTGGCTTCGCCTTTACTTCTACCCTCTTCCACATCCAATGTATAATCTCTCTGATTCTGTTTTCTCTGTCACCACAGATACTTTTGTCCTTCTGCATGATTTCTCAGTTAAGGACAATACTAAATTGGTGTTCAAGGAGTACCTAATCAATATTACTTCTGATAGATTTTCTCTCCAATTTAAACCCAAAAAGAATTCTTGTGCATTTATCAATGCCATTGAGGTTGTTTCCGCCCCGGATACTCTCGTGCCTGAATCAGCTACTACTGTTTCTCCTGTTGGAAATTTTGATGGATTATCCGATTTTGCTCTTCAATCGTTCTACCGTGTTAATGTAGGAGGACCAGAAATCTTTCCTGGAAATGATACTTTGTCAAGAATGTGGGAATCTGATTTTGTTTATAACAAATTCCCCCAAGGTTCTAGGAATGTTTCTGTGGCTTTGGATACCATCAAGTACCCGGAAAACGGAGCAACTCCATTGATTGCTCCAAATTTTGTATATGCAACCGGGCAGGATTTGAAAGATCCTGATACCATGCAGATAAACTTCAATCTATCTTGGATTTTTTACGTAGAGGAAAGTTACTCGTATTTGATCAGACTCCATTTTTGTGACATTGTGAGCAAAATCCTCAATAGTTTGTACTTCAATGTGTACATCAATGGGATGATGGGAATCTCAGTTCTTGATCTCTCACAGGTGACAGGTGCTCTTGCAACTCCATACTATAAAGATCTAGTGCTGAATGCCTCAGCTATAAAAAACAACACCATCATGGTTCAGATTGGTCCAACCAATCTCGATTCCGGGACTCAAGATGCGATCCTTAACGGAGTGGAGATAATGAAAATAAGTAATGATGCAAGGAGCTTGGATGGTTTATTTTCTATTGATGGGACTTTCATGGGAGGTTTTAGATTGAACACAATGAAGATTGTTGCTGCTGTGGGGCTGGTAATGGGAGTGACAGCTATGTTGTTGCTTGCAGTAGTCTTTTTCAGATGGCAAAGAAGGCCTCAAGGTTGGGAGAAGACTAACAGTTTTTCATCATGGCTGCTACCACTCCATTCAACACACTCAAGTTTCTTTTCTAGTAAAAGCAGCTCTAGAAGATCAAGCGTTTTTGGCTCCCGAAAGAGCAAGACTGGTTATTCTGGCATCTACACCAACGTTGGTTTAGGCCGCACCTTCACTCTCAGTGAATTACAGGTTGCTACACAAAATTTTGACGAGAAAGAGGTGATTGGCGTTGGTGGGTTTGGAAAAGTATACGTTGGAGCATTGGACGATGGAACCAAAGTAGCTATTAAACGTGGTAACCCAAGTTCTGATCAAGGTATCAATGAATTCCGCACAGAGATAGAAATGCTCTCCAAACTCCGCCATCGCCACCTTGTTTCTCTTATCGGTTACTGCGACGAGCAATCTGAGATGATTCTTGTGTACGAGTACATGGCTAATGGACCACTACGTGACCACCTATATGGCTCAAACCTCCCACCATTGTCATGGAAACAACGACTCGAGATATGCATTGGCGCCGCTCGTGGATTGCACTATCTTCACACTGGTGCAGCTCAAGGAATTATACACCGTGATGTAAAGACGACGAACATTCTTCTCGACGAGAATTATGTGGCCAAAGTTGCTGATTTTGGGCTATCAAAAGCTGCACCATCATTGGAGCAAACCCATGTGAGCACAGCAGTGAAAGGCAGTTTTGGTTACCTTGATCCTGAGTACTTCAGGAGACAACAATTGACTGAGAAATCTGATGTTTATTCATTTGGGGTCGTCCTTTTCGAGGCGCTATGCGCAAGACAGGTGATAAACCAGTCATTGCCAAGAGATCAAGTCAGTTTGGCTGAGTGGGCGATGCAGTGTCATAGGAAAGGAACTCTGGAGAAGTTAATTGATCCTCATATTGGCAGCTCAATCATACATGGATCACTGAAGAAGTTTGTTGAAGCAGCCGAGAAATGCTTAGCTGAATATGGCGTCGATAGGCCGAGCATGGGAGATGTCTTATGGAACTTGGAATATGCCTTGCAGCTCCAGGAGGCAGTGTCAGAGATTGATCCTGAGGGAGATAAGTGTGAAGATCTTGTTTCTTTAGAAAAATCAAATGACAATGAATCACAAGCAAAATCAGGTGTTTCTAATTCTATCACTGATAATTCTGAAGTATCAGTCAGTGCTCCTTTGTTTTCTGCAATTGGGAGTTTTCAAGGAAGATAA | 2616 | 42.28 | MGGEIHGPSKPRIPFPFSSLFMFLFFFFCLIGLSSAKRSSSIIFSPQDNYLIDCGSLQPTRLNDGRTFKSDRESTSLLSTNEDVQISVDSIPINSTWPSLPLFHTVKIFPDASTYTFYISQPGRHWLRLYFYPLPHPMYNLSDSVFSVTTDTFVLLHDFSVKDNTKLVFKEYLINITSDRFSLQFKPKKNSCAFINAIEVVSAPDTLVPESATTVSPVGNFDGLSDFALQSFYRVNVGGPEIFPGNDTLSRMWESDFVYNKFPQGSRNVSVALDTIKYPENGATPLIAPNFVYATGQDLKDPDTMQINFNLSWIFYVEESYSYLIRLHFCDIVSKILNSLYFNVYINGMMGISVLDLSQVTGALATPYYKDLVLNASAIKNNTIMVQIGPTNLDSGTQDAILNGVEIMKISNDARSLDGLFSIDGTFMGGFRLNTMKIVAAVGLVMGVTAMLLLAVVFFRWQRRPQGWEKTNSFSSWLLPLHSTHSSFFSSKSSSRRSSVFGSRKSKTGYSGIYTNVGLGRTFTLSELQVATQNFDEKEVIGVGGFGKVYVGALDDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPLRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENYVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARQVINQSLPRDQVSLAEWAMQCHRKGTLEKLIDPHIGSSIIHGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSEIDPEGDKCEDLVSLEKSNDNESQAKSGVSNSITDNSEVSVSAPLFSAIGSFQGR | 871 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 47967930 | 47970545 | - | evm.model.ptg000008l.256 | HCH8g1279 | 550377 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1279 | 871 | Gene3D | - | 228 | 413 | - | - | |
HCH8g1279 | 871 | Gene3D | - | 48 | 204 | - | - | |
HCH8g1279 | 871 | FunFam | Receptor-like protein kinase FERONIA | 611 | 824 | - | - | |
HCH8g1279 | 871 | PANTHER | OS07G0166700 PROTEIN | 523 | 813 | IPR045272 | GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER) | |
HCH8g1279 | 871 | Pfam | Malectin-like domain | 52 | 410 | IPR024788 | - | |
HCH8g1279 | 871 | SMART | serkin_6 | 535 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g1279 | 871 | ProSiteProfiles | Protein kinase domain profile. | 535 | 808 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g1279 | 871 | FunFam | Putative receptor-like protein kinase | 49 | 204 | - | - | |
HCH8g1279 | 871 | Gene3D | Transferase(Phosphotransferase) domain 1 | 611 | 826 | - | - | |
HCH8g1279 | 871 | CDD | STKc_IRAK | 541 | 806 | - | - | |
HCH8g1279 | 871 | SUPERFAMILY | Protein kinase-like (PK-like) | 508 | 806 | IPR011009 | - | |
HCH8g1279 | 871 | Pfam | Protein tyrosine and serine/threonine kinase | 538 | 735 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1279 | 871 | ProSitePatterns | Protein kinases ATP-binding region signature. | 541 | 563 | IPR017441 | GO:0005524(InterPro) | |
HCH8g1279 | 871 | FunFam | Receptor-like protein kinase FERONIA | 228 | 412 | - | - | |
HCH8g1279 | 871 | Gene3D | Phosphorylase Kinase; domain 1 | 500 | 610 | - | - | |
HCH8g1279 | 871 | FunFam | receptor-like protein kinase FERONIA | 498 | 610 | - | - | |
HCH8g1279 | 871 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 655 | 667 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1105 | HCH-Chr12:8576738 | HCH8g1279 | HCH-Chr8:47967930 | 5.20E-234 | dispersed | |
HCH14g1131 | HCH-Chr14:38199611 | HCH8g1279 | HCH-Chr8:47967930 | 2.00E-172 | dispersed | |
HCH1g0503 | HCH-Chr1:53866776 | HCH8g1279 | HCH-Chr8:47967930 | 1.10E-188 | dispersed | |
HCH2g1125 | HCH-Chr2:53975542 | HCH8g1279 | HCH-Chr8:47967930 | 9.20E-215 | dispersed | |
HCH7g0297 | HCH-Chr7:2100664 | HCH8g1279 | HCH-Chr8:47967930 | 3.70E-139 | dispersed | |
HCH7g0300 | HCH-Chr7:2130937 | HCH8g1279 | HCH-Chr8:47967930 | 4.90E-136 | dispersed | |
HCH8g1279 | HCH-Chr8:47967930 | HCH9g0843 | HCH-Chr9:5967702 | 7.20E-170 | dispersed | |
HCH9g0912 | HCH-Chr9:6719897 | HCH8g1279 | HCH-Chr8:47967930 | 5.10E-42 | dispersed | |
HCH10g1120 | HCH-Chr10:40287458 | HCH8g1279 | HCH-Chr8:47967930 | 1.70E-54 | transposed | |
HCH4g1363 | HCH-Chr4:9721657 | HCH8g1279 | HCH-Chr8:47967930 | 3.40E-252 | transposed | |
HCH13g0722 | HCH-Chr13:6071437 | HCH8g1279 | HCH-Chr8:47967930 | 3.70E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81728 | PF12819 | Malectin_like | 3.40E-35 | CL0202 | HCH | PK |
Pathway information
