Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1279 ATGGGGGGAGAGATTCATGGGCCATCAAAGCCTCGAATTCCCTTCCCCTTCTCCTCCCTTTTCATGTTTTTGTTTTTTTTTTTTTGCCTCATAGGCCTCTCTTCTGCCAAAAGATCATCCTCTATCATCTTTTCTCCTCAAGATAATTATTTGATTGACTGTGGCTCGTTGCAGCCTACCCGTCTCAATGACGGCCGCACTTTTAAGTCCGATCGTGAATCGACATCTCTCCTTTCTACAAATGAAGATGTGCAGATTTCTGTTGATTCCATTCCCATCAATTCTACTTGGCCTTCTTTGCCTTTGTTTCATACTGTCAAGATTTTCCCTGATGCATCCACCTACACTTTCTATATTTCTCAGCCCGGACGGCATTGGCTTCGCCTTTACTTCTACCCTCTTCCACATCCAATGTATAATCTCTCTGATTCTGTTTTCTCTGTCACCACAGATACTTTTGTCCTTCTGCATGATTTCTCAGTTAAGGACAATACTAAATTGGTGTTCAAGGAGTACCTAATCAATATTACTTCTGATAGATTTTCTCTCCAATTTAAACCCAAAAAGAATTCTTGTGCATTTATCAATGCCATTGAGGTTGTTTCCGCCCCGGATACTCTCGTGCCTGAATCAGCTACTACTGTTTCTCCTGTTGGAAATTTTGATGGATTATCCGATTTTGCTCTTCAATCGTTCTACCGTGTTAATGTAGGAGGACCAGAAATCTTTCCTGGAAATGATACTTTGTCAAGAATGTGGGAATCTGATTTTGTTTATAACAAATTCCCCCAAGGTTCTAGGAATGTTTCTGTGGCTTTGGATACCATCAAGTACCCGGAAAACGGAGCAACTCCATTGATTGCTCCAAATTTTGTATATGCAACCGGGCAGGATTTGAAAGATCCTGATACCATGCAGATAAACTTCAATCTATCTTGGATTTTTTACGTAGAGGAAAGTTACTCGTATTTGATCAGACTCCATTTTTGTGACATTGTGAGCAAAATCCTCAATAGTTTGTACTTCAATGTGTACATCAATGGGATGATGGGAATCTCAGTTCTTGATCTCTCACAGGTGACAGGTGCTCTTGCAACTCCATACTATAAAGATCTAGTGCTGAATGCCTCAGCTATAAAAAACAACACCATCATGGTTCAGATTGGTCCAACCAATCTCGATTCCGGGACTCAAGATGCGATCCTTAACGGAGTGGAGATAATGAAAATAAGTAATGATGCAAGGAGCTTGGATGGTTTATTTTCTATTGATGGGACTTTCATGGGAGGTTTTAGATTGAACACAATGAAGATTGTTGCTGCTGTGGGGCTGGTAATGGGAGTGACAGCTATGTTGTTGCTTGCAGTAGTCTTTTTCAGATGGCAAAGAAGGCCTCAAGGTTGGGAGAAGACTAACAGTTTTTCATCATGGCTGCTACCACTCCATTCAACACACTCAAGTTTCTTTTCTAGTAAAAGCAGCTCTAGAAGATCAAGCGTTTTTGGCTCCCGAAAGAGCAAGACTGGTTATTCTGGCATCTACACCAACGTTGGTTTAGGCCGCACCTTCACTCTCAGTGAATTACAGGTTGCTACACAAAATTTTGACGAGAAAGAGGTGATTGGCGTTGGTGGGTTTGGAAAAGTATACGTTGGAGCATTGGACGATGGAACCAAAGTAGCTATTAAACGTGGTAACCCAAGTTCTGATCAAGGTATCAATGAATTCCGCACAGAGATAGAAATGCTCTCCAAACTCCGCCATCGCCACCTTGTTTCTCTTATCGGTTACTGCGACGAGCAATCTGAGATGATTCTTGTGTACGAGTACATGGCTAATGGACCACTACGTGACCACCTATATGGCTCAAACCTCCCACCATTGTCATGGAAACAACGACTCGAGATATGCATTGGCGCCGCTCGTGGATTGCACTATCTTCACACTGGTGCAGCTCAAGGAATTATACACCGTGATGTAAAGACGACGAACATTCTTCTCGACGAGAATTATGTGGCCAAAGTTGCTGATTTTGGGCTATCAAAAGCTGCACCATCATTGGAGCAAACCCATGTGAGCACAGCAGTGAAAGGCAGTTTTGGTTACCTTGATCCTGAGTACTTCAGGAGACAACAATTGACTGAGAAATCTGATGTTTATTCATTTGGGGTCGTCCTTTTCGAGGCGCTATGCGCAAGACAGGTGATAAACCAGTCATTGCCAAGAGATCAAGTCAGTTTGGCTGAGTGGGCGATGCAGTGTCATAGGAAAGGAACTCTGGAGAAGTTAATTGATCCTCATATTGGCAGCTCAATCATACATGGATCACTGAAGAAGTTTGTTGAAGCAGCCGAGAAATGCTTAGCTGAATATGGCGTCGATAGGCCGAGCATGGGAGATGTCTTATGGAACTTGGAATATGCCTTGCAGCTCCAGGAGGCAGTGTCAGAGATTGATCCTGAGGGAGATAAGTGTGAAGATCTTGTTTCTTTAGAAAAATCAAATGACAATGAATCACAAGCAAAATCAGGTGTTTCTAATTCTATCACTGATAATTCTGAAGTATCAGTCAGTGCTCCTTTGTTTTCTGCAATTGGGAGTTTTCAAGGAAGATAA 2616 42.28 MGGEIHGPSKPRIPFPFSSLFMFLFFFFCLIGLSSAKRSSSIIFSPQDNYLIDCGSLQPTRLNDGRTFKSDRESTSLLSTNEDVQISVDSIPINSTWPSLPLFHTVKIFPDASTYTFYISQPGRHWLRLYFYPLPHPMYNLSDSVFSVTTDTFVLLHDFSVKDNTKLVFKEYLINITSDRFSLQFKPKKNSCAFINAIEVVSAPDTLVPESATTVSPVGNFDGLSDFALQSFYRVNVGGPEIFPGNDTLSRMWESDFVYNKFPQGSRNVSVALDTIKYPENGATPLIAPNFVYATGQDLKDPDTMQINFNLSWIFYVEESYSYLIRLHFCDIVSKILNSLYFNVYINGMMGISVLDLSQVTGALATPYYKDLVLNASAIKNNTIMVQIGPTNLDSGTQDAILNGVEIMKISNDARSLDGLFSIDGTFMGGFRLNTMKIVAAVGLVMGVTAMLLLAVVFFRWQRRPQGWEKTNSFSSWLLPLHSTHSSFFSSKSSSRRSSVFGSRKSKTGYSGIYTNVGLGRTFTLSELQVATQNFDEKEVIGVGGFGKVYVGALDDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGYCDEQSEMILVYEYMANGPLRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENYVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARQVINQSLPRDQVSLAEWAMQCHRKGTLEKLIDPHIGSSIIHGSLKKFVEAAEKCLAEYGVDRPSMGDVLWNLEYALQLQEAVSEIDPEGDKCEDLVSLEKSNDNESQAKSGVSNSITDNSEVSVSAPLFSAIGSFQGR 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47967930 47970545 - evm.model.ptg000008l.256 HCH8g1279 550377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1279 871 Gene3D - 228 413 - -
HCH8g1279 871 Gene3D - 48 204 - -
HCH8g1279 871 FunFam Receptor-like protein kinase FERONIA 611 824 - -
HCH8g1279 871 PANTHER OS07G0166700 PROTEIN 523 813 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
HCH8g1279 871 Pfam Malectin-like domain 52 410 IPR024788 -
HCH8g1279 871 SMART serkin_6 535 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1279 871 ProSiteProfiles Protein kinase domain profile. 535 808 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1279 871 FunFam Putative receptor-like protein kinase 49 204 - -
HCH8g1279 871 Gene3D Transferase(Phosphotransferase) domain 1 611 826 - -
HCH8g1279 871 CDD STKc_IRAK 541 806 - -
HCH8g1279 871 SUPERFAMILY Protein kinase-like (PK-like) 508 806 IPR011009 -
HCH8g1279 871 Pfam Protein tyrosine and serine/threonine kinase 538 735 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1279 871 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524(InterPro)
HCH8g1279 871 FunFam Receptor-like protein kinase FERONIA 228 412 - -
HCH8g1279 871 Gene3D Phosphorylase Kinase; domain 1 500 610 - -
HCH8g1279 871 FunFam receptor-like protein kinase FERONIA 498 610 - -
HCH8g1279 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1105 HCH-Chr12:8576738 HCH8g1279 HCH-Chr8:47967930 5.20E-234 dispersed
HCH14g1131 HCH-Chr14:38199611 HCH8g1279 HCH-Chr8:47967930 2.00E-172 dispersed
HCH1g0503 HCH-Chr1:53866776 HCH8g1279 HCH-Chr8:47967930 1.10E-188 dispersed
HCH2g1125 HCH-Chr2:53975542 HCH8g1279 HCH-Chr8:47967930 9.20E-215 dispersed
HCH7g0297 HCH-Chr7:2100664 HCH8g1279 HCH-Chr8:47967930 3.70E-139 dispersed
HCH7g0300 HCH-Chr7:2130937 HCH8g1279 HCH-Chr8:47967930 4.90E-136 dispersed
HCH8g1279 HCH-Chr8:47967930 HCH9g0843 HCH-Chr9:5967702 7.20E-170 dispersed
HCH9g0912 HCH-Chr9:6719897 HCH8g1279 HCH-Chr8:47967930 5.10E-42 dispersed
HCH10g1120 HCH-Chr10:40287458 HCH8g1279 HCH-Chr8:47967930 1.70E-54 transposed
HCH4g1363 HCH-Chr4:9721657 HCH8g1279 HCH-Chr8:47967930 3.40E-252 transposed
HCH13g0722 HCH-Chr13:6071437 HCH8g1279 HCH-Chr8:47967930 3.70E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81728 PF12819 Malectin_like 3.40E-35 CL0202 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1279 - - - 0.0