Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1286 ATGGCTGATCAAGGTTATGAATTTGAAAATCACGGATTTCTCCATCGTATTCCTAGAGGGCTTATTTTTGCACTTTCCAGAGCTTTGACTGCTTTCTTTGCTCTTGTTGGAGCTTTTGCAGGAGCTATTGCTGGTGCTTTAGCTGGTAGAGCTTCTGATACTGGTGTTCTCCATGGAGCTGGTTTGGGTGCTGTTGCTGGGGCTGTTCTTTCTGTAGAGGTTCTCGAGGCTTCCCGTGCATACTGGTGTCTTGTACAATCGGGATCCCGTGGCTTATCATCAATGGCAGATTTCATGGAGGAACTTCTTCATGACACGTTTATAGAAGAACAATTTACTCCTGCAATGTTAAGTACTTACCATTGGCAGGTTAACATTGCTGATATGCACTATGAAGATTTCCATGATATTTATGGCCGAGTTGCATATGAAGAAGGATTGTCAGATGATTTACTACAGAAGCTGCCATGCCATGTGATCATGGATGAAATCCAGGCAGGACAGAGTATCCACTGTACGATATGCTTGCAGGACATTGCACTGGGAGAAACTGCACGAACTTTACCAGAGTGTCACCACGCATTTCACTTGATGTGTGTCGATAAGTGGCTAACCAAACATCGGTCATGCCCGATATGCAGGCAGGAAGTTTGA 654 44.5 MADQGYEFENHGFLHRIPRGLIFALSRALTAFFALVGAFAGAIAGALAGRASDTGVLHGAGLGAVAGAVLSVEVLEASRAYWCLVQSGSRGLSSMADFMEELLHDTFIEEQFTPAMLSTYHWQVNIADMHYEDFHDIYGRVAYEEGLSDDLLQKLPCHVIMDEIQAGQSIHCTICLQDIALGETARTLPECHHAFHLMCVDKWLTKHRSCPICRQEV 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47997464 47999448 + evm.model.ptg000008l.249 HCH8g1286 550384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1286 217 Pfam Ring finger domain 171 214 IPR001841 -
HCH8g1286 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 217 IPR013083 -
HCH8g1286 217 SMART ring_2 172 213 IPR001841 -
HCH8g1286 217 ProSiteProfiles Zinc finger RING-type profile. 172 214 IPR001841 -
HCH8g1286 217 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 12 216 IPR044523 -
HCH8g1286 217 SUPERFAMILY RING/U-box 154 217 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1327 HCH-Chr13:41192506 HCH8g1286 HCH-Chr8:47997464 2.10E-31 dispersed
HCH7g1406 HCH-Chr7:46797674 HCH8g1286 HCH-Chr8:47997464 4.20E-07 dispersed
HCH8g1286 HCH-Chr8:47997464 HCH14g0150 HCH-Chr14:25159662 3.10E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1286 - - - 0.0