Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1292 ATGACATTTCTTGGATTTCTCTTGGTGGGTTTTCTCTTAATGGGCTCTTCAGTTCATGCCAACAATGGAGAGTGGATTGATGCTCACGCAACATTCTATGGTGGCGGTGATGCTTCTGGTACAATGGGAGGGGCTTGTGGTTATGGGAATTTGTATAGCCAAGGATATGGTACAAATACTGCAGCTTTAAGCACAGCTTTATTTAACAATGGACTGAGCTGTGGTGCTTGCTTTGAAATTAAGTGTATAAATGATCAGAGATGGTGTTTAGGTAGCACTATTGTGGTCACTGCCACCAACTTCTGCCCACCAAATAATGCACTTCCTAATAATGGTGGTGGTTGGTGCAATCCTCCTCAGCACCATTTTGATCTCTCCCAGCCCGTGTTTCAGCAAATTGCTCATTATAAAGCTGGCATAGTTCCTGTGTCTTACAAAAGGGTTTCTTGTGAAAAGAGAGGAGGCATTAGATTCACAATAAATGGCCATTCTTACTTCAATTTAGTCCTTATAACCAATGTTGGAGGTGCTGGTGATGTTCATGCAGTTTCAATCAAAGGTTCAAAAACAGGGTGGCAACCTATGTCTAGGAACTGGGGTCAAAACTGGCAAAGCAATTCTTATCTCAATGGGCAAAGCCTCTCCTTTAAGATAACAACCAGCGACGGCCGCACCGTCGTTTCCAACGATGTTGCCCCAGCTGGTTGGTCCTTTGGTCAGACATTTACTGGTCTGCAGATCCCATGA 747 43.91 MTFLGFLLVGFLLMGSSVHANNGEWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCINDQRWCLGSTIVVTATNFCPPNNALPNNGGGWCNPPQHHFDLSQPVFQQIAHYKAGIVPVSYKRVSCEKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFKITTSDGRTVVSNDVAPAGWSFGQTFTGLQIP 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48034614 48035788 + evm.model.ptg000008l.243 HCH8g1292 550390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1292 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
HCH8g1292 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
HCH8g1292 248 FunFam Expansin 14 151 - -
HCH8g1292 248 CDD DPBB_EXPA_N 24 150 - -
HCH8g1292 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
HCH8g1292 248 SMART dpbb_1 60 145 IPR007112 -
HCH8g1292 248 FunFam Expansin 155 247 - -
HCH8g1292 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
HCH8g1292 248 PANTHER EXPANSIN-A15 10 244 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664(InterPro)
HCH8g1292 248 Gene3D - 155 247 IPR036749 -
HCH8g1292 248 Pfam Lytic transglycolase 60 145 IPR009009 -
HCH8g1292 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
HCH8g1292 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576(InterPro)
HCH8g1292 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576(InterPro)
HCH8g1292 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576(InterPro)
HCH8g1292 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
HCH8g1292 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576(InterPro)
HCH8g1292 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
HCH8g1292 248 Gene3D - 14 151 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0896 HCH-Chr4:5762602 HCH8g1292 HCH-Chr8:48034614 2.40E-118 dispersed
HCH8g1292 HCH-Chr8:48034614 HCH9g0677 HCH-Chr9:4503623 2.50E-99 dispersed
HCH1g0914 HCH-Chr1:57522355 HCH8g1292 HCH-Chr8:48034614 7.10E-115 wgd
HCH13g0724 HCH-Chr13:6105552 HCH8g1292 HCH-Chr8:48034614 1.60E-109 wgd
HCH3g0070 HCH-Chr3:402889 HCH8g1292 HCH-Chr8:48034614 6.70E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1292 - - - 0.0