Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1293 ATGGCAACTGTCACTACACAAGCTTCCGCTGCTGTTTTCCGGCCATGCGCCTCGAGATCGAGGTTCCTGTCTGGGTCTTCTGGAAAATTCAGCAGGGTTTTGTCTGTTAAACCAGTTGCTACTTCTTCATCTTCTTCTTTCAAAGTTGAAGCAAAGAAAGGAGAGTGGTTGCCTGGCCTACCATCGCCCGCCTACTTATCCGGCAGTCTTCCAGGAGACAATGGATTTGACCCTTTGGGTCTTGCTGAGGATCCAGAGAACTTGAGGTGGTTTGTCCAAGCTGAGCTTGTGAATAGTCGTTGGGCTATGTTGGGTGTTGCAGGAATGCTATTACCAGAAGTATTCACCAAGATCGGGATCATCAACGCGCCGCAATGGTACGATGCCGGGAAGGCGGAATACTTCGCATCGTCATCGACCCTCTTCGTGATCGAGTTCATTCTGTTTCATTACGTCGAGATCAGAAGGTGGCAAGACATTAAGAACCCAGGAAGTGTTAACCAAGACCCCATTTTCAAGCAATATAGTTTGCCACCAAATGAAGTTGGTTACCCTGGAGGCATTTTCAACCCCTTGAACTTTGCTCCCACTGTTGAGGCCAAGGAGAAGGAATTAGCCAATGGGAGGCTTGCAATGTTGGCATTTTTGGGATTTATAATTCAACACAATGTGACTGGAAAGGGACCATTTGACAACTTGTTGCAGCACATCTCAGATCCATGGCACAACACCATTGTCCAAACATTTAGTGGCAACTAA 759 47.17 MATVTTQASAAVFRPCASRSRFLSGSSGKFSRVLSVKPVATSSSSSFKVEAKKGEWLPGLPSPAYLSGSLPGDNGFDPLGLAEDPENLRWFVQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTVEAKEKELANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTFSGN 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48037477 48038640 + evm.model.ptg000008l.242 HCH8g1293 550391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1293 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
HCH8g1293 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 245 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
HCH8g1293 252 FunFam Chlorophyll a-b binding protein, chloroplastic 63 242 - -
HCH8g1293 252 SUPERFAMILY Chlorophyll a-b binding protein 53 249 - -
HCH8g1293 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0405 HCH-Chr13:2794056 HCH8g1293 HCH-Chr8:48037477 5.10E-41 transposed
HCH4g0645 HCH-Chr4:4226454 HCH8g1293 HCH-Chr8:48037477 1.10E-57 transposed
HCH8g0373 HCH-Chr8:33885483 HCH8g1293 HCH-Chr8:48037477 4.40E-41 transposed
HCH8g0587 HCH-Chr8:42695706 HCH8g1293 HCH-Chr8:48037477 3.10E-52 transposed
HCH3g0069 HCH-Chr3:401129 HCH8g1293 HCH-Chr8:48037477 4.40E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1293 K08910 - csv:101222701 480.33