Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1300 ATGGGTAGAGACTCATTCTTGAGTTGGCGATCAAATCATCAAGTTATGGCCCATGAAGAAGCTTTACCTTTTTCATGCAATCCTCCACCATTTGATTATAGAAGTTGTCATACTACTGCATTGGATTGGCAATATAATTTTCCATTACAAGAAAACGTTTTTGACAATATTCCATTGTTGGAGAGCGGCCCGATCGATTCCATCTTCTCTCCGATGGATATCGAACCGATCAATACTTTTATAGCAGAAGATGCTCTGTGTGATTATGGAAATGAGCTTGGAATTTGGAGTGAAATGGAGACTGGATTTGGGTTCCAAAAAGAACCTCCATTGATAGATCACAGTGGAGAAAATGAAAAGAAGAACGAGAAAAAGGAGAGAATGAGGGTTAGAAAGTGCAGAGAAATGACAAGTAGTTCAAAATTACTGTCAAGAAAAACAATATCTCAATACTTTTACATGCCGATTACTAAGGCGGCGAAAGAGCTCAACGTGGGACTTACTCTCTTGAAGAAGAGATGCAGAGAGTTGGGTATAAGAAGGTGGCCTCATAGGAAGTTGATGAGTCTTCAAACCCTAATCAAGAATGTTAAGGAGCTTGGTAAGGAGGAGTGCGAGGGGAATGAAGTGAAATTAACGAATGCATTAGAGATATTAGAGAGAGAGAAGAAGTTGATGGAGGAAAGACCTGATTTGCAGCTTGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAACTACAAGAAAAGAAAGCTCTCAGGGATGGTTAACTCCCAAAATTTCTCTTCCATTTCCATTGCAGAAGAGGAAGAGGAAGAAGAAGATGAAGAAATTAAATATCTATTATCTGAGTGCTCATTTTCGTCTAGTAATAGCAGTAGCTTGATGATATAA 903 38.98 MGRDSFLSWRSNHQVMAHEEALPFSCNPPPFDYRSCHTTALDWQYNFPLQENVFDNIPLLESGPIDSIFSPMDIEPINTFIAEDALCDYGNELGIWSEMETGFGFQKEPPLIDHSGENEKKNEKKERMRVRKCREMTSSSKLLSRKTISQYFYMPITKAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELGKEECEGNEVKLTNALEILEREKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGMVNSQNFSSISIAEEEEEEEDEEIKYLLSECSFSSSNSSSLMI 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48060803 48062117 - evm.model.ptg000008l.235 HCH8g1300 550398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1300 300 MobiDBLite consensus disorder prediction 112 126 - -
HCH8g1300 300 Pfam RWP-RK domain 143 190 IPR003035 -
HCH8g1300 300 MobiDBLite consensus disorder prediction 107 126 - -
HCH8g1300 300 PANTHER PROTEIN RKD4 100 262 IPR044607 GO:0003700(InterPro)
HCH8g1300 300 Coils Coil 202 229 - -
HCH8g1300 300 Coils Coil 267 287 - -
HCH8g1300 300 ProSiteProfiles RWP-RK domain profile. 120 211 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1325 HCH-Chr11:45221261 HCH8g1300 HCH-Chr8:48060803 1.40E-28 dispersed
HCH14g0714 HCH-Chr14:35555870 HCH8g1300 HCH-Chr8:48060803 5.10E-20 dispersed
HCH8g1300 HCH-Chr8:48060803 HCH12g0476 HCH-Chr12:2796835 2.10E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34073 PF02042 RWP-RK 3.10E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1300 - - - 0.0