Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1300 ATGGGTAGAGACTCATTCTTGAGTTGGCGATCAAATCATCAAGTTATGGCCCATGAAGAAGCTTTACCTTTTTCATGCAATCCTCCACCATTTGATTATAGAAGTTGTCATACTACTGCATTGGATTGGCAATATAATTTTCCATTACAAGAAAACGTTTTTGACAATATTCCATTGTTGGAGAGCGGCCCGATCGATTCCATCTTCTCTCCGATGGATATCGAACCGATCAATACTTTTATAGCAGAAGATGCTCTGTGTGATTATGGAAATGAGCTTGGAATTTGGAGTGAAATGGAGACTGGATTTGGGTTCCAAAAAGAACCTCCATTGATAGATCACAGTGGAGAAAATGAAAAGAAGAACGAGAAAAAGGAGAGAATGAGGGTTAGAAAGTGCAGAGAAATGACAAGTAGTTCAAAATTACTGTCAAGAAAAACAATATCTCAATACTTTTACATGCCGATTACTAAGGCGGCGAAAGAGCTCAACGTGGGACTTACTCTCTTGAAGAAGAGATGCAGAGAGTTGGGTATAAGAAGGTGGCCTCATAGGAAGTTGATGAGTCTTCAAACCCTAATCAAGAATGTTAAGGAGCTTGGTAAGGAGGAGTGCGAGGGGAATGAAGTGAAATTAACGAATGCATTAGAGATATTAGAGAGAGAGAAGAAGTTGATGGAGGAAAGACCTGATTTGCAGCTTGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAACTACAAGAAAAGAAAGCTCTCAGGGATGGTTAACTCCCAAAATTTCTCTTCCATTTCCATTGCAGAAGAGGAAGAGGAAGAAGAAGATGAAGAAATTAAATATCTATTATCTGAGTGCTCATTTTCGTCTAGTAATAGCAGTAGCTTGATGATATAA 903 38.98 MGRDSFLSWRSNHQVMAHEEALPFSCNPPPFDYRSCHTTALDWQYNFPLQENVFDNIPLLESGPIDSIFSPMDIEPINTFIAEDALCDYGNELGIWSEMETGFGFQKEPPLIDHSGENEKKNEKKERMRVRKCREMTSSSKLLSRKTISQYFYMPITKAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELGKEECEGNEVKLTNALEILEREKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGMVNSQNFSSISIAEEEEEEEDEEIKYLLSECSFSSSNSSSLMI 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48060803 48062117 - evm.model.ptg000008l.235 HCH8g1300 550398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1300 300 MobiDBLite consensus disorder prediction 112 126 - -
HCH8g1300 300 Pfam RWP-RK domain 143 190 IPR003035 -
HCH8g1300 300 MobiDBLite consensus disorder prediction 107 126 - -
HCH8g1300 300 PANTHER PROTEIN RKD4 100 262 IPR044607 GO:0003700(InterPro)
HCH8g1300 300 Coils Coil 202 229 - -
HCH8g1300 300 Coils Coil 267 287 - -
HCH8g1300 300 ProSiteProfiles RWP-RK domain profile. 120 211 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1300 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1325 HCH-Chr11:45221261 HCH8g1300 HCH-Chr8:48060803 1.40E-28 dispersed
HCH14g0714 HCH-Chr14:35555870 HCH8g1300 HCH-Chr8:48060803 5.10E-20 dispersed
HCH8g1300 HCH-Chr8:48060803 HCH12g0476 HCH-Chr12:2796835 2.10E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1300 . 73 258 AtRKD Transcription Factor Family AT1G18790 58.8 8.5e-45 177.6
HCH14g0714 . 20 182 AtRKD Transcription Factor Family AT4G35590 53.4 3.5e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34073 PF02042 RWP-RK 3.10E-21 No_clan HCH TF