Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1300 | ATGGGTAGAGACTCATTCTTGAGTTGGCGATCAAATCATCAAGTTATGGCCCATGAAGAAGCTTTACCTTTTTCATGCAATCCTCCACCATTTGATTATAGAAGTTGTCATACTACTGCATTGGATTGGCAATATAATTTTCCATTACAAGAAAACGTTTTTGACAATATTCCATTGTTGGAGAGCGGCCCGATCGATTCCATCTTCTCTCCGATGGATATCGAACCGATCAATACTTTTATAGCAGAAGATGCTCTGTGTGATTATGGAAATGAGCTTGGAATTTGGAGTGAAATGGAGACTGGATTTGGGTTCCAAAAAGAACCTCCATTGATAGATCACAGTGGAGAAAATGAAAAGAAGAACGAGAAAAAGGAGAGAATGAGGGTTAGAAAGTGCAGAGAAATGACAAGTAGTTCAAAATTACTGTCAAGAAAAACAATATCTCAATACTTTTACATGCCGATTACTAAGGCGGCGAAAGAGCTCAACGTGGGACTTACTCTCTTGAAGAAGAGATGCAGAGAGTTGGGTATAAGAAGGTGGCCTCATAGGAAGTTGATGAGTCTTCAAACCCTAATCAAGAATGTTAAGGAGCTTGGTAAGGAGGAGTGCGAGGGGAATGAAGTGAAATTAACGAATGCATTAGAGATATTAGAGAGAGAGAAGAAGTTGATGGAGGAAAGACCTGATTTGCAGCTTGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAACTACAAGAAAAGAAAGCTCTCAGGGATGGTTAACTCCCAAAATTTCTCTTCCATTTCCATTGCAGAAGAGGAAGAGGAAGAAGAAGATGAAGAAATTAAATATCTATTATCTGAGTGCTCATTTTCGTCTAGTAATAGCAGTAGCTTGATGATATAA | 903 | 38.98 | MGRDSFLSWRSNHQVMAHEEALPFSCNPPPFDYRSCHTTALDWQYNFPLQENVFDNIPLLESGPIDSIFSPMDIEPINTFIAEDALCDYGNELGIWSEMETGFGFQKEPPLIDHSGENEKKNEKKERMRVRKCREMTSSSKLLSRKTISQYFYMPITKAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKELGKEECEGNEVKLTNALEILEREKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGMVNSQNFSSISIAEEEEEEEDEEIKYLLSECSFSSSNSSSLMI | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 48060803 | 48062117 | - | evm.model.ptg000008l.235 | HCH8g1300 | 550398 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1300 | 300 | MobiDBLite | consensus disorder prediction | 112 | 126 | - | - | |
HCH8g1300 | 300 | Pfam | RWP-RK domain | 143 | 190 | IPR003035 | - | |
HCH8g1300 | 300 | MobiDBLite | consensus disorder prediction | 107 | 126 | - | - | |
HCH8g1300 | 300 | PANTHER | PROTEIN RKD4 | 100 | 262 | IPR044607 | GO:0003700(InterPro) | |
HCH8g1300 | 300 | Coils | Coil | 202 | 229 | - | - | |
HCH8g1300 | 300 | Coils | Coil | 267 | 287 | - | - | |
HCH8g1300 | 300 | ProSiteProfiles | RWP-RK domain profile. | 120 | 211 | IPR003035 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g1325 | HCH-Chr11:45221261 | HCH8g1300 | HCH-Chr8:48060803 | 1.40E-28 | dispersed | |
HCH14g0714 | HCH-Chr14:35555870 | HCH8g1300 | HCH-Chr8:48060803 | 5.10E-20 | dispersed | |
HCH8g1300 | HCH-Chr8:48060803 | HCH12g0476 | HCH-Chr12:2796835 | 2.10E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34073 | PF02042 | RWP-RK | 3.10E-21 | No_clan | HCH | TF |
Pathway information
