Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1323 ATGGGTCTGTTTGTTTGGGTCTTCTCCTTGTTTTCTGCTGTAACCCTCTTGAGCCCTTGCTCTCTCTCTCTCTCTGAAGATGGTTTAATATTGTTAGAAATCAAGAGCACTTTAAATGATAGTAAGAACTTTCTTAGTAATTGGAGCCCTTTAGATGAATCTCCTTGCAAATGGACTGGTATTGCTTGCCATCCTCAGGACTATCGAGTTAGCTCAATTAATCTACCATACATGCAACTAGGAGGGATTATATCTCCCAGCATCGGTAAACTTAGTAGATTACAGAGACTGGCTCTTCACCAAAACAGCTTGCATGGATATATCCCCAATGAGCTTGGTAATTGTTCTGAACTCCGAGCCGTGTACTTGAGGGCTAATTATCTCCAAGGTGGCATACCATCAAATATTGGAAACCTTTCTTATCTTTCTATACTTGATTTATCAAGCAATTCCCTAAAGGGTGCTATACCATCATCAATTGGTCGTCTCACACGCCTACGCAATCTGAACTTGTCCACCAACTTTCTTTCTGGAGAAATCCCAGATATTGGAGTTTTAAGCACCTTTGGGAACCATTCGTTCATTGGTAACTTAGATCTTTGTGGTCGGCAAGTGAACAAGCTCTGTCGAACCTCACTGGGGTTTCCTGTTGTCTTGCCGCATGCTGAGAGTGACGAAGCTCCAGTCCCTACAAAACGATCCTCTCATTACATCAAAGGACTAGTGATCGGTGCAATGTTGACGATGGGGCTTGTGTTGGTCACACTTCTTGCCTTCATGTGGATCTGTTTGCTATCAAAGAAAGAAAGAACTGCAAAGAGGTATATGGAAGTTAAGAAGCTAGTAGAACGTGAACCAAGCGCGAAGCTGATTACATTCCATGGTGATCTACCATACCCAACATGTGAGATCATAGAAAAGCTGGAGGCCCTTGATGAAACAAATATTGTTGGTTCAGGAGCGTTTGGCACTGTGTATCGTATGGTCATGAATGATCGTGGAACATTTGCTGTAAAAAGGGTTGACAAGAGTCGAGAAGGTTCAGACCAAGTATTTGAAAGAGAATTAGAAATATTGGGAAGCGTTAAGCACATAAATCTAGTGAACTTGCGTGGTTATTGCAAGCTCCCTTCTGCAAAGCTTCTGATTTCTGATTATCTGGCAGCGGGAAGCTTGGATGATTTCTTGCATGAACATGGACATGAACAGTCTTTGAATTGGAATGCTCGTTTAAAGATAGCTCTTGGCTCTGCTCGAGGGCTCGCATACTTGCACCACGATTGCTGTCCAAAGATTGTGCACTGTGACATAAAATCCAGCAACATTCTTCTTGATGAGAACTTAGAGCCACATATATCTGACTTTGGTCTTGCCAAACTTTTGGTTGATGAGGATTCCCATGTCACAACTGTTGTTGCTGGTACATTTGGTTATTTGGCTCCAGAATACTTGCAAAGTGGGATAGCAACTGAGAAGTCAGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCAACTGATCAATTTTTTTCAAAGAGGGGCTTAAATGTCGTCGGTTGGCTGAACACACTTCGGGGAGTTAACCAGATGGAAAATGTAGTGGATAAAAGGTGTGAGAATGCAGATGTCGAAACCGTAGAAGCGATTCTTGAAATAGCGGCCATGTGCACCGATGGCAAACCGGCTGTTCGGCCTACAATGAACCGAGTACTGCAGCTGCTAGAGCAAGAGGTAATGTCGCCCTACTCGAGTGATAGCTACGAGTCTCACTCAGATTATCAGTGA 1803 43.15 MGLFVWVFSLFSAVTLLSPCSLSLSEDGLILLEIKSTLNDSKNFLSNWSPLDESPCKWTGIACHPQDYRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNSLHGYIPNELGNCSELRAVYLRANYLQGGIPSNIGNLSYLSILDLSSNSLKGAIPSSIGRLTRLRNLNLSTNFLSGEIPDIGVLSTFGNHSFIGNLDLCGRQVNKLCRTSLGFPVVLPHAESDEAPVPTKRSSHYIKGLVIGAMLTMGLVLVTLLAFMWICLLSKKERTAKRYMEVKKLVEREPSAKLITFHGDLPYPTCEIIEKLEALDETNIVGSGAFGTVYRMVMNDRGTFAVKRVDKSREGSDQVFERELEILGSVKHINLVNLRGYCKLPSAKLLISDYLAAGSLDDFLHEHGHEQSLNWNARLKIALGSARGLAYLHHDCCPKIVHCDIKSSNILLDENLEPHISDFGLAKLLVDEDSHVTTVVAGTFGYLAPEYLQSGIATEKSDVYSFGVLLLELVTGKRPTDQFFSKRGLNVVGWLNTLRGVNQMENVVDKRCENADVETVEAILEIAAMCTDGKPAVRPTMNRVLQLLEQEVMSPYSSDSYESHSDYQ 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48198566 48202059 - evm.model.ptg000008l.212 HCH8g1323 550421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1323 600 Gene3D Transferase(Phosphotransferase) domain 1 387 594 - -
HCH8g1323 600 SMART serkin_6 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1323 600 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
HCH8g1323 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1323 600 SUPERFAMILY L domain-like 26 208 - -
HCH8g1323 600 SUPERFAMILY Protein kinase-like (PK-like) 296 581 IPR011009 -
HCH8g1323 600 Gene3D Phosphorylase Kinase; domain 1 273 386 - -
HCH8g1323 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
HCH8g1323 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 593 - -
HCH8g1323 600 Pfam Protein kinase domain 314 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1323 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
HCH8g1323 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524(InterPro)
HCH8g1323 600 Coils Coil 265 285 - -
HCH8g1323 600 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 68 187 IPR051564 GO:0016020(PANTHER)
HCH8g1323 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1323 600 Pfam Leucine rich repeat 117 174 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1296 HCH-Chr6:47172440 HCH8g1323 HCH-Chr8:48198566 9.70E-126 dispersed
HCH8g1323 HCH-Chr8:48198566 HCH1g0825 HCH-Chr1:56890772 9.00E-63 dispersed
HCH3g0284 HCH-Chr3:1800580 HCH8g1323 HCH-Chr8:48198566 4.70E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81729 PF00069 Pkinase 3.60E-47 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1323 - - - 0.0