Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1327 ATGGGGCATAAAAAGAAAAACCTTGATCCACGTTCTAAACAATCTCCGGCGCCTCCTCATGGAGCCGCCGTTGATTTTCCAACTTCATCGAACGCGGATGATACTTCCATAGCTGATCAGTCTAGTTTTCATAGTAATCTTCATAGCCTACCTAGGATCGAGCCGGTTTTTGGTAATGAATCGGATGCTTTGTCTTGTTCTACAATTAAGCTTGAATGTGAGCGTGCTCTCACTACGCTTCGGCGTGGGAATCATACGGAGGCACTTAGGTTAATGAAGGAGTTGTGTTCTCGAAATGAGAACTCTGTTCATTCTGCTTTGATTCATCGGGTTCAGGGTACTGTTTATGTGAAAGTTGCCGCGATTATTGATGATTTGAATACAAAGCAGCGGCATTTGAGGAATGCGATTGAGTCTGCTCGTAAAGCGGTGGAGCTTTCTCCGAGTTCGATTGAGTTTGCGCATTTTTATGCTAATTTGTTGTATGAGGTTGCAAATGATGGGAAGGATTATGAGGAGGTGGTTCAGGAATGTGAGCGGGCTCTCGGGATTGAATTTCCGATTGATCCTGCGAAGGAAAGTTTGCAGGATGAGAAGCAGCAGAAGATACCTACTGCTGAAGCGCGGATTGCGCATGTGCAGACTGAGTTGAGGCAGTTGATTCAAAAGTCGAATATTTATTCGATATCGTCTTGGATGAAGAATTTGGGAAATGGAGAGGAGAAGTTTAGGTTGATTCCAATTCGAAGGGTGACAGAGGACCCCATGGAAGTGAGTTTGGTTCAGGCTAGAAGGGCAAATGAAATCAAGAAGGCAACTAAGAAGTCTGATGCCGAAGATTTGGCAGAGAAAGATGCCACGAAGAAGTCTGATGCCGCAAGAGAAGCATTTTTAGCAGAACTGGCTCTGGATGTGCTTCATGATGAGGCTGTAGATGGAGAGTAA 945 44.76 MGHKKKNLDPRSKQSPAPPHGAAVDFPTSSNADDTSIADQSSFHSNLHSLPRIEPVFGNESDALSCSTIKLECERALTTLRRGNHTEALRLMKELCSRNENSVHSALIHRVQGTVYVKVAAIIDDLNTKQRHLRNAIESARKAVELSPSSIEFAHFYANLLYEVANDGKDYEEVVQECERALGIEFPIDPAKESLQDEKQQKIPTAEARIAHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVSLVQARRANEIKKATKKSDAEDLAEKDATKKSDAAREAFLAELALDVLHDEAVDGE 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48233023 48233967 + evm.model.ptg000008l.208 HCH8g1327 550425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1327 314 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 275 IPR052398 -
HCH8g1327 314 MobiDBLite consensus disorder prediction 1 38 - -
HCH8g1327 314 Pfam Protein of unknown function (DUF627) 76 185 IPR006866 -
HCH8g1327 314 Coils Coil 123 143 - -
HCH8g1327 314 Gene3D Tetratricopeptide repeat domain 61 225 IPR011990 GO:0005515(InterPro)
HCH8g1327 314 SUPERFAMILY TPR-like 72 185 IPR011990 GO:0005515(InterPro)
HCH8g1327 314 Coils Coil 203 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1327 HCH-Chr8:48233023 HCH8g1330 HCH-Chr8:48243294 2.90E-145 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1327 - - - 0.0