Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1328 ATGGTTTCCGCTGTACAACCGAAGAAGCGAGTCTTTGGTGTGTCAACTCTGGAGAAGACTGCTCACGATGACATTAGGAAACTTGCCTCAGCAGTGTATTTGCAAGTGAGCATTATTAGTCAGGCTCTCATATTTGTTACACGTTCTCGAAGTTGGTCTTTTGTGGAACGTCCCGGGTTATTACTCGTCGCAGCTTTTATGGTTGCTCAACTGATTGCTACCTTAATTGCTGTTTATGCAAATTGGAAATTTGCTGCCATTGAAGGGATTGGTTGGGGTTGGGCTGGAGTTATCTGGCTTTATAACATCATCTTTTACATCCCACTCGATCCCATAAAGTTCATTATACGATACGCTCTGAGTGGAAGAGCTTGGGATCTTGTCATCGAACAAAGGATTGCCTTTACAAGGCAAAAGGACTTTGGTAAAGAACAGAGAGAGCTACAATGGGCTCATGCTCAAAGAACACTACATGGGCTGCAAGCACCTGATGCCAAGATGTTCCATGACAGAACACATTTCACAGAGCTGAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCACGGTTAAGGGAACTTCATACACTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGGCTTGATATTGACACAATTCAGCAAGCTTACACTGTTTGA 672 43.9 MVSAVQPKKRVFGVSTLEKTAHDDIRKLASAVYLQVSIISQALIFVTRSRSWSFVERPGLLLVAAFMVAQLIATLIAVYANWKFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFIIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48235268 48236743 - evm.model.ptg000008l.207 HCH8g1328 550426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1328 223 Coils Coil 174 194 - -
HCH8g1328 223 Gene3D - 2 119 - -
HCH8g1328 223 PANTHER CALCIUM-TRANSPORTING ATPASE 11 171 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
HCH8g1328 223 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 120 IPR023298 -
HCH8g1328 223 Gene3D - 172 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1326 HCH-Chr8:48216710 HCH8g1328 HCH-Chr8:48235268 8.60E-116 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1328 K01535 - csv:101217264 403.29