Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1330 ATGGGGCGTAAAAAGAAAAACCTTGATCCACGTTCTAAACAATCTCCGGCGCCTCCTCATGGAGCCGCCGTTGATTTTCCAACTTTATCGAACGCGGATGATATTTCCATATCTGATCAGTCTAGTATTCATAGTAATCTTCATAGCCTAGCTAGGATCGAGCCGGTTTTTGGTAATGAATCGGATGCTTTGTCTTGTTCTACAATTAAGCTTGAATGTGAGCGTGCTCTCACTACGCTTCGGCGTGGGAATCATACGAAGGCACTTAGGTTAATGAAGGAGTTGTGTTCTCGAAATGAGAATTCTGTTCATTCTGCTTTGATTCATCGGGTTCAGGGTACTGTTTGTGTGAAAGTTGCTGCGATTATTGATGATTTGAATACAAAGCAGCGGCATTTGAGGAATGCGATTGAGTCTGCTCGTAAAGCGGTGGAGCTTTCTCCGAGTTCGATTGAGTTTGCGCATTTTTATGCTAATTTGTTGTATGAGGTTGCAAATGATGGGAAGGAGTATGAGGAGGTGGTTCAGGAATGTGAGCGGGCTCTCGGGATTGAATTTCCGATTGATCCTGCGAAGGAAAGTTTGCAGGATGAGAAGCAGCAGAAGATACCTACTGCTGAAGCGCGGATTGCGCATGTGCAGACTGAGTTGAGGCAGTTGATTCAAAAGTCGAATATTTATTCGATATCGTCTTGGATGAAGAATTTGGGAAATGGAGAGGAGAAGTTTAGGTTGATTCCAATTCGAAGGGTGACAGAGGACCCCATGGAAGTGAGACTGGTTCAGGCTAGAAGGGCAAATGAAATCAAGAAGGCAACTAAAACGCCTGAGGAGCGGAGGAAGGAGATTGAAGTTCGCGTGGCTGCTGCAAGGCTTTTGCAACAAAAGTCGGATTCACCGCAAACACAAAATGAAGGAGGTAAATCTGATCGGACTTCAGATTCGTCTTTAGGATCTGGTACAAGAGTTAGTGAAAGGAGGAAACATGGAAATTTGCGAAAACATGGATCTTCAGCTGAAAGGAGGGATTGGGTTCGTTCTTTTTGGAATGCTATGAGTATGGACTCGAAGAAAGATTTGCTTAAGATCAAGATAAGTGATCTTAAGACACATTTTAGTTCTTCAAAGGACACTTCAGCCAATGAAGTTATTTCAGAAGCTTTGTCGTTTTGTGATGCTAATAAAACATGGAAATTTTGGGTTTGCTGCAAATGTAATGAGAAATTTGTGGATTCGGAAACCCACATGCACCATGTGGTTCAGGAGCACATGGGTAACCTCTTGCCGAAAATGCAGTCTATTTTGCCCCAGAATGTTGACAATGAATGGGCTGAAATGCTTCTTAATTGCTCTTGGAAAGCACTGGATGTTTCAGCTGCAGCTAAAATGCTCACAGACCAGATGAAATTTAAAGATTCTGAGCTAATTGAGGATATCTGCTTGCAGAATCATTCTGATGAGTGCGATGACTGTTTCAAAGATACACAGAATTCTTCTCCTGAGAAGCAGAATTATGGGAATAGCTTAAGTGACTGTATTGTTTACGAGAAAATTACCAACGACAGATGTAATGCCTATGATGAAAACCAGGGTTCCATGGAAGCATATTCCCTATATGACCGCTTTCCAATATCTGATGACTCTGAGAGGACAAAGCTTCTTGAGAAAATTCATGCCATCTTTGAGTTGCTTATTAGACATAAATATCTTGCTGCAAGCCATATTAACAAGGTTATACAGTTTACAATGGATGAGTTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAAGGTCTGGATCAAACACCAATATGCATCTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAATTCTTGCAAGAATTATCCCATTCCTGTGGTCTTGGTAGACACCCTGATAAAAGTACTGGTCTGATTGAAGATTCAAAGAGTGATAAACAAGCTCTTGAGATCAAAGAGAAAATTGTTCTCAATGGAGATGCATCCCTGCTCCTCCTTGATGATTATTTGCTGTCATCTGATTTTGCTCATGCTAATGGTCAGGTCGCGTACAGAGATGATATGCCTTCTGCAAAGGTTGTTGATTCAGATGGAGTTCATCCTGATGCCGATGCGGATGCTTTTCTGTCCTGGATATATGCAGGGCCCTCTAGTGGGGAACAATTGGCATCATGGATGCGAACAAAGGAAGAAAAGATACAGCAAGGAATGGAAATTCTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGTCTTTGCGAGAGAAAATGTGAGCATTTGAGCTACGAGGAAGCATTGCAGTCAGTTGAGGATCTCTGCCTTGAAGAGGGTAAGAAGAGGGAAGTGGTGACAGAATTTGTCCACCAGAGCTATGAGTCAATTCTGAGGAAACGAAGAGAAGAGTTTATTGAGTCTGAAAATGATGTGATGTTTCTTAGCAGTAGGTTTGAGTTAGATGCTATAACTAGTGTTTTGAAAGAAGCAGAAGCTCTGAATGTTAATCAATTTGGATATGAGGAAACTTATGGCAGTGTGCCTTCTCAGTTATGTGATTTGGAAGCTGGTGAAGATGAAGATTGGAGAGCCAAAGATTATTTGCATCAAGGTGATACTTGTATCGAAGTGGCAATCCAAAGACAAAAAGAACAGTTATCTGTGGAGATCAGCAAAATTGATGCGCGGATCATGCGAAATGTTACAGGAATGCAACAGTTGGAACTTAAACTTGAACCTGTTTCTGCCCACGATTATGAATCAATATTGTTGCCTCTTGTGAATTCATATTTGAGGACACACTTAGAAGATTTGGCAGAGAAAGATGCCACGAAGAAGTCTGATGCCGCAAGAGAAGCATTTTTAGCAGAACTGGCTCTGGATTCAAAAAAGGTTGTTAGAGGAGGTAGTGATAATTCCAGACATCCACATGAAAAGACGAAGGAAAAGAAAAGGAGCAAGGAGTATAGAAAAACCAAGGACTCTAAGATGATTACTGGTCCTGAACTGGATGTGCTTCATGATGAGGCTGTAGATGGAGATCCCTTTCAAGTTGCATCGGATAGTGACCTTGCAGAATTGGATATTGCTGTTTCTGAGAATGGTGATGCTTTAAGACTACAGGAGGAAGAGTTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAACTTGAAGAGACTTTGGAGTATCAAAGACGAATTGAAAATGAGGCTAAACAGAAGCATCTGGCTGAACTACAAAAGAAATTTACCCAGACATATCCAGAGAAGAAAGTTGATGTGGCAGTACGTGATAATCTCCTCGGACTTGTGCCTAATATTGGTGGTGATGACCAGCAGTTTAAGCCTTCTGTGGTGGATCAACTGGCAGAAAATGATTTTGTTCCTGACAATTTTGAAGACTTATCTAGGAATGGTTCTGCAATGCCATCTGAAATTTCAGGTGATCAAAAGATTAGTGGTGTACCAAATGTAGGAATTCTAGAGAATAGTCTACCTTCTGATAGACGGAAGGGGAGGAAAAGTAGACGGCACAAGGTTTCTGGCAAATCAGTAGATAAAAACCAGCCTTCATCATCTGATCAGGACAATATAGATGTTGACAGCTTAAAGAAAGAGCAAGTTAGATATCATGACAATTTCCTTGCAGATAGTGTTAGTCCTCTATCTGGAGATAATAGTACAAAGATTTTGAGACCACAACATGTAGAAGATGAGGAAAGATTTCAAGCTGATCTTAAAAAGGCTGTACGCCAGAGCCTTGACACATTTCAAGAACAGAAGAAATTGCCCTTGATTACTAGTTACAGAACACCATTGATTAGTTATGGTATAGTAGAGAGCAATGGTATTCACTCAAATGAAGTCAATGTAGCAAATGTGCAGGGAGAAGATATATTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTAAATGTGATAATTCAGTCCTTATGGCATTTAAGACGGTTTCGAGAAGAATTCCTGAAGAGATCTACAACTGAGCATGTTCATGTGGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTTGCTGCCTTGAGCATGGCCTCTACAGATACAAGAAGAGAAGCAGTTGCTCCTACTTCTTTGAGAATAGCACTAAGCAATCTCTGTCCTGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCAGAAGTTCTGGCCGTCATATTTGATTGCTTACACCAGTCATTGACTCCCAGTTCAAGTGTTTCTGAAACTGAATCAGTAGAAAGCAATTGCATGGGGTCTTGGGACTGTGCAAGTGACACTTGTTTGGTACATTCCATCTTTGGAATGGACATTTTTGAACGTATGAATTGCTACAGCTGTGGCCTGGAATCTAGACATCTTAAGTACACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTGCAGAAAGCTCTTTCGATGAACTTTTAAATCTTGTTGAAATGAATCATCAGCTAGCTTGTGATCTGGATGTCGGTGGTTGTGGAAAACTCAATTATATTCATCACTTTCTCTCTGCACCACCACATGTATTCACAACAGTCTTAGGCTGGCAGAACACTTGTGAGAGTGTTGATGATATCTCAGCAACGTTAGCTGCTCTGAGTACTGAGATAGATATCAGTGTCCTTTATAGGGGTTTAGATCCAAAGAATGCACATAGTTTGGTGTCAGTGGTTTGCTACTACGGGCAACACTATCATTGTTTTGCCTACAGTCATGAGAATAAATGCTGGATAATGTATGACGATAGAACTGTTAAGGTAATTGGTGGCTGGGCTGATGTTCTTTCCATGTGTGAAAGAGGGCGGTTGCAACCTCAGGTTCTGTTCTTCGAAACTGTAAACTAG 4917 41.0 MGRKKKNLDPRSKQSPAPPHGAAVDFPTLSNADDISISDQSSIHSNLHSLARIEPVFGNESDALSCSTIKLECERALTTLRRGNHTKALRLMKELCSRNENSVHSALIHRVQGTVCVKVAAIIDDLNTKQRHLRNAIESARKAVELSPSSIEFAHFYANLLYEVANDGKEYEEVVQECERALGIEFPIDPAKESLQDEKQQKIPTAEARIAHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKSDSPQTQNEGGKSDRTSDSSLGSGTRVSERRKHGNLRKHGSSAERRDWVRSFWNAMSMDSKKDLLKIKISDLKTHFSSSKDTSANEVISEALSFCDANKTWKFWVCCKCNEKFVDSETHMHHVVQEHMGNLLPKMQSILPQNVDNEWAEMLLNCSWKALDVSAAAKMLTDQMKFKDSELIEDICLQNHSDECDDCFKDTQNSSPEKQNYGNSLSDCIVYEKITNDRCNAYDENQGSMEAYSLYDRFPISDDSERTKLLEKIHAIFELLIRHKYLAASHINKVIQFTMDELQGLASGSHLLNQGLDQTPICICFLGASQLRKILKFLQELSHSCGLGRHPDKSTGLIEDSKSDKQALEIKEKIVLNGDASLLLLDDYLLSSDFAHANGQVAYRDDMPSAKVVDSDGVHPDADADAFLSWIYAGPSSGEQLASWMRTKEEKIQQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQSVEDLCLEEGKKREVVTEFVHQSYESILRKRREEFIESENDVMFLSSRFELDAITSVLKEAEALNVNQFGYEETYGSVPSQLCDLEAGEDEDWRAKDYLHQGDTCIEVAIQRQKEQLSVEISKIDARIMRNVTGMQQLELKLEPVSAHDYESILLPLVNSYLRTHLEDLAEKDATKKSDAAREAFLAELALDSKKVVRGGSDNSRHPHEKTKEKKRSKEYRKTKDSKMITGPELDVLHDEAVDGDPFQVASDSDLAELDIAVSENGDALRLQEEEFRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKFTQTYPEKKVDVAVRDNLLGLVPNIGGDDQQFKPSVVDQLAENDFVPDNFEDLSRNGSAMPSEISGDQKISGVPNVGILENSLPSDRRKGRKSRRHKVSGKSVDKNQPSSSDQDNIDVDSLKKEQVRYHDNFLADSVSPLSGDNSTKILRPQHVEDEERFQADLKKAVRQSLDTFQEQKKLPLITSYRTPLISYGIVESNGIHSNEVNVANVQGEDIFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLKRSTTEHVHVGDPCVVCALYEIFAALSMASTDTRREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSVSETESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSFDELLNLVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCESVDDISATLAALSTEIDISVLYRGLDPKNAHSLVSVVCYYGQHYHCFAYSHENKCWIMYDDRTVKVIGGWADVLSMCERGRLQPQVLFFETVN 1638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48243294 48251483 + evm.model.ptg000008l.205 HCH8g1330 550428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1330 1638 Pfam Ubiquitin carboxyl-terminal hydrolase 1306 1633 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
HCH8g1330 1638 Coils Coil 1053 1073 - -
HCH8g1330 1638 ProSitePatterns Zinc finger C2H2 type domain signature. 402 423 IPR013087 -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 292 338 - -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 969 996 - -
HCH8g1330 1638 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1305 1637 IPR028889 -
HCH8g1330 1638 Gene3D Tetratricopeptide repeat domain 29 195 IPR011990 GO:0005515(InterPro)
HCH8g1330 1638 CDD Peptidase_C19 1397 1635 - -
HCH8g1330 1638 Gene3D Cysteine proteinases 1293 1636 - -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 1 25 - -
HCH8g1330 1638 Coils Coil 729 749 - -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 1132 1203 - -
HCH8g1330 1638 Pfam Protein of unknown function (DUF627) 76 185 IPR006866 -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 1140 1154 - -
HCH8g1330 1638 Pfam Protein of unknown function (DUF629) 345 879 IPR006865 -
HCH8g1330 1638 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1635 IPR052398 -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 294 320 - -
HCH8g1330 1638 SUPERFAMILY Cysteine proteinases 1305 1635 IPR038765 -
HCH8g1330 1638 Coils Coil 123 143 - -
HCH8g1330 1638 MobiDBLite consensus disorder prediction 968 996 - -
HCH8g1330 1638 Coils Coil 203 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1327 HCH-Chr8:48233023 HCH8g1330 HCH-Chr8:48243294 2.90E-145 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1330 - - - 0.0