Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1330 | ATGGGGCGTAAAAAGAAAAACCTTGATCCACGTTCTAAACAATCTCCGGCGCCTCCTCATGGAGCCGCCGTTGATTTTCCAACTTTATCGAACGCGGATGATATTTCCATATCTGATCAGTCTAGTATTCATAGTAATCTTCATAGCCTAGCTAGGATCGAGCCGGTTTTTGGTAATGAATCGGATGCTTTGTCTTGTTCTACAATTAAGCTTGAATGTGAGCGTGCTCTCACTACGCTTCGGCGTGGGAATCATACGAAGGCACTTAGGTTAATGAAGGAGTTGTGTTCTCGAAATGAGAATTCTGTTCATTCTGCTTTGATTCATCGGGTTCAGGGTACTGTTTGTGTGAAAGTTGCTGCGATTATTGATGATTTGAATACAAAGCAGCGGCATTTGAGGAATGCGATTGAGTCTGCTCGTAAAGCGGTGGAGCTTTCTCCGAGTTCGATTGAGTTTGCGCATTTTTATGCTAATTTGTTGTATGAGGTTGCAAATGATGGGAAGGAGTATGAGGAGGTGGTTCAGGAATGTGAGCGGGCTCTCGGGATTGAATTTCCGATTGATCCTGCGAAGGAAAGTTTGCAGGATGAGAAGCAGCAGAAGATACCTACTGCTGAAGCGCGGATTGCGCATGTGCAGACTGAGTTGAGGCAGTTGATTCAAAAGTCGAATATTTATTCGATATCGTCTTGGATGAAGAATTTGGGAAATGGAGAGGAGAAGTTTAGGTTGATTCCAATTCGAAGGGTGACAGAGGACCCCATGGAAGTGAGACTGGTTCAGGCTAGAAGGGCAAATGAAATCAAGAAGGCAACTAAAACGCCTGAGGAGCGGAGGAAGGAGATTGAAGTTCGCGTGGCTGCTGCAAGGCTTTTGCAACAAAAGTCGGATTCACCGCAAACACAAAATGAAGGAGGTAAATCTGATCGGACTTCAGATTCGTCTTTAGGATCTGGTACAAGAGTTAGTGAAAGGAGGAAACATGGAAATTTGCGAAAACATGGATCTTCAGCTGAAAGGAGGGATTGGGTTCGTTCTTTTTGGAATGCTATGAGTATGGACTCGAAGAAAGATTTGCTTAAGATCAAGATAAGTGATCTTAAGACACATTTTAGTTCTTCAAAGGACACTTCAGCCAATGAAGTTATTTCAGAAGCTTTGTCGTTTTGTGATGCTAATAAAACATGGAAATTTTGGGTTTGCTGCAAATGTAATGAGAAATTTGTGGATTCGGAAACCCACATGCACCATGTGGTTCAGGAGCACATGGGTAACCTCTTGCCGAAAATGCAGTCTATTTTGCCCCAGAATGTTGACAATGAATGGGCTGAAATGCTTCTTAATTGCTCTTGGAAAGCACTGGATGTTTCAGCTGCAGCTAAAATGCTCACAGACCAGATGAAATTTAAAGATTCTGAGCTAATTGAGGATATCTGCTTGCAGAATCATTCTGATGAGTGCGATGACTGTTTCAAAGATACACAGAATTCTTCTCCTGAGAAGCAGAATTATGGGAATAGCTTAAGTGACTGTATTGTTTACGAGAAAATTACCAACGACAGATGTAATGCCTATGATGAAAACCAGGGTTCCATGGAAGCATATTCCCTATATGACCGCTTTCCAATATCTGATGACTCTGAGAGGACAAAGCTTCTTGAGAAAATTCATGCCATCTTTGAGTTGCTTATTAGACATAAATATCTTGCTGCAAGCCATATTAACAAGGTTATACAGTTTACAATGGATGAGTTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAAGGTCTGGATCAAACACCAATATGCATCTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAATTCTTGCAAGAATTATCCCATTCCTGTGGTCTTGGTAGACACCCTGATAAAAGTACTGGTCTGATTGAAGATTCAAAGAGTGATAAACAAGCTCTTGAGATCAAAGAGAAAATTGTTCTCAATGGAGATGCATCCCTGCTCCTCCTTGATGATTATTTGCTGTCATCTGATTTTGCTCATGCTAATGGTCAGGTCGCGTACAGAGATGATATGCCTTCTGCAAAGGTTGTTGATTCAGATGGAGTTCATCCTGATGCCGATGCGGATGCTTTTCTGTCCTGGATATATGCAGGGCCCTCTAGTGGGGAACAATTGGCATCATGGATGCGAACAAAGGAAGAAAAGATACAGCAAGGAATGGAAATTCTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGTCTTTGCGAGAGAAAATGTGAGCATTTGAGCTACGAGGAAGCATTGCAGTCAGTTGAGGATCTCTGCCTTGAAGAGGGTAAGAAGAGGGAAGTGGTGACAGAATTTGTCCACCAGAGCTATGAGTCAATTCTGAGGAAACGAAGAGAAGAGTTTATTGAGTCTGAAAATGATGTGATGTTTCTTAGCAGTAGGTTTGAGTTAGATGCTATAACTAGTGTTTTGAAAGAAGCAGAAGCTCTGAATGTTAATCAATTTGGATATGAGGAAACTTATGGCAGTGTGCCTTCTCAGTTATGTGATTTGGAAGCTGGTGAAGATGAAGATTGGAGAGCCAAAGATTATTTGCATCAAGGTGATACTTGTATCGAAGTGGCAATCCAAAGACAAAAAGAACAGTTATCTGTGGAGATCAGCAAAATTGATGCGCGGATCATGCGAAATGTTACAGGAATGCAACAGTTGGAACTTAAACTTGAACCTGTTTCTGCCCACGATTATGAATCAATATTGTTGCCTCTTGTGAATTCATATTTGAGGACACACTTAGAAGATTTGGCAGAGAAAGATGCCACGAAGAAGTCTGATGCCGCAAGAGAAGCATTTTTAGCAGAACTGGCTCTGGATTCAAAAAAGGTTGTTAGAGGAGGTAGTGATAATTCCAGACATCCACATGAAAAGACGAAGGAAAAGAAAAGGAGCAAGGAGTATAGAAAAACCAAGGACTCTAAGATGATTACTGGTCCTGAACTGGATGTGCTTCATGATGAGGCTGTAGATGGAGATCCCTTTCAAGTTGCATCGGATAGTGACCTTGCAGAATTGGATATTGCTGTTTCTGAGAATGGTGATGCTTTAAGACTACAGGAGGAAGAGTTTAGACGCAAAATTGAGCTGGAAGCAGATGAAAGAAAACTTGAAGAGACTTTGGAGTATCAAAGACGAATTGAAAATGAGGCTAAACAGAAGCATCTGGCTGAACTACAAAAGAAATTTACCCAGACATATCCAGAGAAGAAAGTTGATGTGGCAGTACGTGATAATCTCCTCGGACTTGTGCCTAATATTGGTGGTGATGACCAGCAGTTTAAGCCTTCTGTGGTGGATCAACTGGCAGAAAATGATTTTGTTCCTGACAATTTTGAAGACTTATCTAGGAATGGTTCTGCAATGCCATCTGAAATTTCAGGTGATCAAAAGATTAGTGGTGTACCAAATGTAGGAATTCTAGAGAATAGTCTACCTTCTGATAGACGGAAGGGGAGGAAAAGTAGACGGCACAAGGTTTCTGGCAAATCAGTAGATAAAAACCAGCCTTCATCATCTGATCAGGACAATATAGATGTTGACAGCTTAAAGAAAGAGCAAGTTAGATATCATGACAATTTCCTTGCAGATAGTGTTAGTCCTCTATCTGGAGATAATAGTACAAAGATTTTGAGACCACAACATGTAGAAGATGAGGAAAGATTTCAAGCTGATCTTAAAAAGGCTGTACGCCAGAGCCTTGACACATTTCAAGAACAGAAGAAATTGCCCTTGATTACTAGTTACAGAACACCATTGATTAGTTATGGTATAGTAGAGAGCAATGGTATTCACTCAAATGAAGTCAATGTAGCAAATGTGCAGGGAGAAGATATATTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTCTAAATGTGATAATTCAGTCCTTATGGCATTTAAGACGGTTTCGAGAAGAATTCCTGAAGAGATCTACAACTGAGCATGTTCATGTGGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATCTTTGCTGCCTTGAGCATGGCCTCTACAGATACAAGAAGAGAAGCAGTTGCTCCTACTTCTTTGAGAATAGCACTAAGCAATCTCTGTCCTGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCAGAAGTTCTGGCCGTCATATTTGATTGCTTACACCAGTCATTGACTCCCAGTTCAAGTGTTTCTGAAACTGAATCAGTAGAAAGCAATTGCATGGGGTCTTGGGACTGTGCAAGTGACACTTGTTTGGTACATTCCATCTTTGGAATGGACATTTTTGAACGTATGAATTGCTACAGCTGTGGCCTGGAATCTAGACATCTTAAGTACACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTTCGAACAATGAAGGTTATGTGTGCAGAAAGCTCTTTCGATGAACTTTTAAATCTTGTTGAAATGAATCATCAGCTAGCTTGTGATCTGGATGTCGGTGGTTGTGGAAAACTCAATTATATTCATCACTTTCTCTCTGCACCACCACATGTATTCACAACAGTCTTAGGCTGGCAGAACACTTGTGAGAGTGTTGATGATATCTCAGCAACGTTAGCTGCTCTGAGTACTGAGATAGATATCAGTGTCCTTTATAGGGGTTTAGATCCAAAGAATGCACATAGTTTGGTGTCAGTGGTTTGCTACTACGGGCAACACTATCATTGTTTTGCCTACAGTCATGAGAATAAATGCTGGATAATGTATGACGATAGAACTGTTAAGGTAATTGGTGGCTGGGCTGATGTTCTTTCCATGTGTGAAAGAGGGCGGTTGCAACCTCAGGTTCTGTTCTTCGAAACTGTAAACTAG | 4917 | 41.0 | MGRKKKNLDPRSKQSPAPPHGAAVDFPTLSNADDISISDQSSIHSNLHSLARIEPVFGNESDALSCSTIKLECERALTTLRRGNHTKALRLMKELCSRNENSVHSALIHRVQGTVCVKVAAIIDDLNTKQRHLRNAIESARKAVELSPSSIEFAHFYANLLYEVANDGKEYEEVVQECERALGIEFPIDPAKESLQDEKQQKIPTAEARIAHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKSDSPQTQNEGGKSDRTSDSSLGSGTRVSERRKHGNLRKHGSSAERRDWVRSFWNAMSMDSKKDLLKIKISDLKTHFSSSKDTSANEVISEALSFCDANKTWKFWVCCKCNEKFVDSETHMHHVVQEHMGNLLPKMQSILPQNVDNEWAEMLLNCSWKALDVSAAAKMLTDQMKFKDSELIEDICLQNHSDECDDCFKDTQNSSPEKQNYGNSLSDCIVYEKITNDRCNAYDENQGSMEAYSLYDRFPISDDSERTKLLEKIHAIFELLIRHKYLAASHINKVIQFTMDELQGLASGSHLLNQGLDQTPICICFLGASQLRKILKFLQELSHSCGLGRHPDKSTGLIEDSKSDKQALEIKEKIVLNGDASLLLLDDYLLSSDFAHANGQVAYRDDMPSAKVVDSDGVHPDADADAFLSWIYAGPSSGEQLASWMRTKEEKIQQGMEILQMLEKEFYHLQSLCERKCEHLSYEEALQSVEDLCLEEGKKREVVTEFVHQSYESILRKRREEFIESENDVMFLSSRFELDAITSVLKEAEALNVNQFGYEETYGSVPSQLCDLEAGEDEDWRAKDYLHQGDTCIEVAIQRQKEQLSVEISKIDARIMRNVTGMQQLELKLEPVSAHDYESILLPLVNSYLRTHLEDLAEKDATKKSDAAREAFLAELALDSKKVVRGGSDNSRHPHEKTKEKKRSKEYRKTKDSKMITGPELDVLHDEAVDGDPFQVASDSDLAELDIAVSENGDALRLQEEEFRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKFTQTYPEKKVDVAVRDNLLGLVPNIGGDDQQFKPSVVDQLAENDFVPDNFEDLSRNGSAMPSEISGDQKISGVPNVGILENSLPSDRRKGRKSRRHKVSGKSVDKNQPSSSDQDNIDVDSLKKEQVRYHDNFLADSVSPLSGDNSTKILRPQHVEDEERFQADLKKAVRQSLDTFQEQKKLPLITSYRTPLISYGIVESNGIHSNEVNVANVQGEDIFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLKRSTTEHVHVGDPCVVCALYEIFAALSMASTDTRREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTPSSSVSETESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCAESSFDELLNLVEMNHQLACDLDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCESVDDISATLAALSTEIDISVLYRGLDPKNAHSLVSVVCYYGQHYHCFAYSHENKCWIMYDDRTVKVIGGWADVLSMCERGRLQPQVLFFETVN | 1638 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 48243294 | 48251483 | + | evm.model.ptg000008l.205 | HCH8g1330 | 550428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1330 | 1638 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1306 | 1633 | IPR001394 | GO:0004843(InterPro)|GO:0016579(InterPro) | |
HCH8g1330 | 1638 | Coils | Coil | 1053 | 1073 | - | - | |
HCH8g1330 | 1638 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 402 | 423 | IPR013087 | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 292 | 338 | - | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 969 | 996 | - | - | |
HCH8g1330 | 1638 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1305 | 1637 | IPR028889 | - | |
HCH8g1330 | 1638 | Gene3D | Tetratricopeptide repeat domain | 29 | 195 | IPR011990 | GO:0005515(InterPro) | |
HCH8g1330 | 1638 | CDD | Peptidase_C19 | 1397 | 1635 | - | - | |
HCH8g1330 | 1638 | Gene3D | Cysteine proteinases | 1293 | 1636 | - | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
HCH8g1330 | 1638 | Coils | Coil | 729 | 749 | - | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 1132 | 1203 | - | - | |
HCH8g1330 | 1638 | Pfam | Protein of unknown function (DUF627) | 76 | 185 | IPR006866 | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 1140 | 1154 | - | - | |
HCH8g1330 | 1638 | Pfam | Protein of unknown function (DUF629) | 345 | 879 | IPR006865 | - | |
HCH8g1330 | 1638 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 1 | 1635 | IPR052398 | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 294 | 320 | - | - | |
HCH8g1330 | 1638 | SUPERFAMILY | Cysteine proteinases | 1305 | 1635 | IPR038765 | - | |
HCH8g1330 | 1638 | Coils | Coil | 123 | 143 | - | - | |
HCH8g1330 | 1638 | MobiDBLite | consensus disorder prediction | 968 | 996 | - | - | |
HCH8g1330 | 1638 | Coils | Coil | 203 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH8g1327 | HCH-Chr8:48233023 | HCH8g1330 | HCH-Chr8:48243294 | 2.90E-145 | proximal |
Pathway information
