Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1333 ATGGAAGCTCCAAATTCTCTGAATAACAGATGGATTGCTACAGTCGCAAGCATTTGGATTCAATGTATATGTGGTTCTTCTTACACTTTTGGCATCTACTCTTCTGCTCTCAAATCATCCCAACATTACGACCAATCAACACTTGACACTGTTTCTGTCTCCAAGGATATTGGAGCCACTGCCGGAATTCTTGCCGGCCTCCTTTACTCAGCCATTGTTTCCGATAATCGCCGCCGCAGTGCTTTTATTGGACCATGGGTGGTTCTTGCTGTGGGAGCAGTTCAGTGCTTTATTGGATATATTTTCATATGGGCAACTGTTTCCGGGATAATAAATCGGCCGCCGGTACCGGTGATGTGTTTTTTCATGTTTTTAGCTGTGCATGCTCAAGTGTTCTTTAACACGGCCAATGTAGTTAGCGGCGTTCATAACTTCCAGCTTTATGGTGGGACCATTGTTGGCATTCTTAAGGGATTTCTTGGTCTTAGTGGAGCAGTATTGATCCAATTCTCTAACACATTATGCAATGGAGATCCAAGAAATTATCTTCTAATGCTGGCAATCTTACCCACACTTGTGACCCTTTTGGTGATGTGCTTTGTGGTAATTGACAAAGCTGAGATTGGGAATGAATTGAAGCATTTGAACTCTTTCTCAACACTTGCTTTGATAATTTCTCTTTACCTCACTCTTCTTATCATTTTGGACAATCTCTTCACTTTATCAATAGGGGTTCGCATCTTCACATTCATTCTACTTTTGAGTCTACTTGCTTCCCCTCTCCGAATCGCGATTAGAGCTCGAAGAGAGGACTATGATAAAAAATCTTCTTCTACTTTCTCTTTTGAAACAACCCTTTCAAAGCAGCATAATGAAGATGATTCCCTTGAATATCATCAACTTCCCAGTGAAGAAGACAAGGATCATCAACTTATGATTGTTTCAGATAATCAAAGCATGAATATAATTCAGGCCATTAGTACTATAAACTTTTGGCTATTGTTTTTTGCAATGATATGTGGGATGGGATCTGGATTAGCCACCATAAACAACATGAATCAACTCGGTCAATCTCTTGGTTACAAAACAGTGGAAATAAATGCCTTTGTTTCATTATGGAGCATATGGAATTTCCTTGGACGTTTAGGAGCTGGCTATGCTTCTGATTTTCTCCTTCGTGTATCAGGCTGGGCTAGGCCGTTGTTGATGGCCATTGGCTTGTTAACTATGAGTCTTGGCCATATTATCATTGCTGCTGGTTTCCATGGAAATCTGTACGTGGGATCAGTCATTGTGGGAATCTGTTATGGCACTCAATGGTCACTAATGCCTACAATTACTTCAGAGATATTTGGGTTACAGCATATGGGAACTATTTACAATACCATAACCATGGCTGGTCCCATTGGATCTTATATTTTATCTGTTAGAATCATTGGATATATATATGACAGAGAAGCTTCTGCAATAGACAACTTTTGCTCAGGCAAACATTGCTTTATGACATCTTTTCTGATCATGGCTGCTGTGGCTTTCTTGGGTTTTCTTGTTGCCATTGTCTTGTTCTTTCGAACTAGGCGATTCTATCAACTCCTGGTTCAAAAAAGAGCCGTCCAAGTTTTTCGAAGTAGCGAGAGAATGAATGCATAA 1650 40.24 MEAPNSLNNRWIATVASIWIQCICGSSYTFGIYSSALKSSQHYDQSTLDTVSVSKDIGATAGILAGLLYSAIVSDNRRRSAFIGPWVVLAVGAVQCFIGYIFIWATVSGIINRPPVPVMCFFMFLAVHAQVFFNTANVVSGVHNFQLYGGTIVGILKGFLGLSGAVLIQFSNTLCNGDPRNYLLMLAILPTLVTLLVMCFVVIDKAEIGNELKHLNSFSTLALIISLYLTLLIILDNLFTLSIGVRIFTFILLLSLLASPLRIAIRARREDYDKKSSSTFSFETTLSKQHNEDDSLEYHQLPSEEDKDHQLMIVSDNQSMNIIQAISTINFWLLFFAMICGMGSGLATINNMNQLGQSLGYKTVEINAFVSLWSIWNFLGRLGAGYASDFLLRVSGWARPLLMAIGLLTMSLGHIIIAAGFHGNLYVGSVIVGICYGTQWSLMPTITSEIFGLQHMGTIYNTITMAGPIGSYILSVRIIGYIYDREASAIDNFCSGKHCFMTSFLIMAAVAFLGFLVAIVLFFRTRRFYQLLVQKRAVQVFRSSERMNA 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48268150 48270113 + evm.model.ptg000008l.202 HCH8g1333 550431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1333 549 Pfam Nodulin-like 10 264 IPR010658 -
HCH8g1333 549 Pfam Major Facilitator Superfamily 334 527 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
HCH8g1333 549 CDD MFS_Mch1p_like 10 514 - -
HCH8g1333 549 Gene3D MFS general substrate transporter like domains 214 522 IPR036259 -
HCH8g1333 549 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 529 - GO:0016020(PANTHER)
HCH8g1333 549 SUPERFAMILY MFS general substrate transporter 217 527 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0539 HCH-Chr2:49198931 HCH8g1333 HCH-Chr8:48268150 2.50E-83 dispersed
HCH8g1333 HCH-Chr8:48268150 HCH8g1335 HCH-Chr8:48278304 1.40E-259 dispersed
HCH8g1332 HCH-Chr8:48265645 HCH8g1333 HCH-Chr8:48268150 6.60E-206 tandem
HCH8g1333 HCH-Chr8:48268150 HCH8g1334 HCH-Chr8:48273843 9.30E-232 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1333 - - - 0.0