Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1334 ATGAAAGCTAAAATGAAAGCTTCCTCTCTCAGTAACAGATGGATCGCTACAGTTTCCTGCATTTGGATTCAATGTTTATGTGGTTCTTCTTACACTTTCAGCATCTACTCTTCTGCTCTCAAGTTTTCACAACACTATGACCAATCAACACTTGACACTGTTTCTGCCTCCAAGGATATTGGATCCGCCGCCGGAGTTTTCGCCGGCCTTCTTTACTCAGCCGTTGTTTCCAAGAATCGCCTCCCTAGTGCTTTGACAGGACCATGGGTGGTTCTTGCTGTGGGAGCAGTGCTGTCTTTTGTTGGATATATTTTCATTTGGGCAGTTGTTTCTGGGATAATCGAACGTCCACCGGTACCTGCGATGTGTTTTTTCATGTTTTTGACTGCAAATGCTCAAGTGTTCTTCAACACTGCCACCGTAGTTACTGGTGTCCAAAATTTTGAGCTTTATGGTGGAACTATTGTTGGCATTCTTAAGGGATTTCTAGGCCTCAGTGGAGCAATACTGATTCAATTCTTTAACACAATATGCAAAGGAGACCCAAAAAATTATCTTTTAATGCTAGCAATCTTGCCAACAGTTATGACCCTTTTGTTGATGTTCTTTGTGGTAATCGACAAAACTGAGACTGGTAACGAATCAAAGCACTTAAACTCTTTTTCAATATTCTCTCTTATAATCTCCATTTATCTCACTATTCTTATCATTTTGGACAATATCCTTACTGATCTACCATTTTGGGCTCGTATCATCATATTCGTTCTTCTCTTAACTCTACTTGCTTCCCCTCTAAGAATTGCAATCAGAGCTCAGAAAGAGGATTATGAAAAATCTTCTTTAACAACAACCCCTTCAAAGAATCATTATGAAGATGATTCCTTTGAATATCGTCAACTTCCCAGTGGAGATCAGGAGAAGGATCATGTTGTGATTGTTTCAGATGATAAAAGCATGAATATGATTCAAGCCATGAGTACTGCAAACTTCTGGCTATTGTTTTTTGCACTGATGTGTGGGATGGGATCTGGATTAGCCACCATAAACAACATGAATCAAATCGGTCAATCTCTTGGATACAAAACAGTGAGGATAAACACCTTTGTTTCATTATGGAGCATATGGAATTTCCTTGGACGTTTAGGAGCTGGTTATGTTTCTGATCTTCTCCTTCGCGTTTCGGGTTTGGCGAGACCATTGTTAATGGCCATTGGCTTGTTAATTATGAGTCTTGGCCATATTGTGATTGCTTCTGGTTTCACTGGAAATTTGTATGTGGGATTTGTCATTGTGGGAATTTGTTATGGCTCTCAATTATCACTAATGCCTACAATTATTTCAGACATATTTGGATTACAACACATGGGAACTATTTACAACACCATAAACATAGCTGGTTCAATTGGATCATACATTTTGTCTGTTAAAGTCATTGGATATATGTATGACAAAGAAGCTTCTGCAACAGATGATTTCTGCTCAGGCAAACATTGCTTCATGACATCTTTTCTTATCATGGCAGCTGTGGCTTTCCTAGGTTCTCTTGTTGCTATTGTCCTGTTCTTTAGAACCAGAAAATTCTATCAACTTCTTGTTCAAGCAAGAGCAGTACAAGATTTTTCAAAGCAGTAA 1632 38.85 MKAKMKASSLSNRWIATVSCIWIQCLCGSSYTFSIYSSALKFSQHYDQSTLDTVSASKDIGSAAGVFAGLLYSAVVSKNRLPSALTGPWVVLAVGAVLSFVGYIFIWAVVSGIIERPPVPAMCFFMFLTANAQVFFNTATVVTGVQNFELYGGTIVGILKGFLGLSGAILIQFFNTICKGDPKNYLLMLAILPTVMTLLLMFFVVIDKTETGNESKHLNSFSIFSLIISIYLTILIILDNILTDLPFWARIIIFVLLLTLLASPLRIAIRAQKEDYEKSSLTTTPSKNHYEDDSFEYRQLPSGDQEKDHVVIVSDDKSMNMIQAMSTANFWLLFFALMCGMGSGLATINNMNQIGQSLGYKTVRINTFVSLWSIWNFLGRLGAGYVSDLLLRVSGLARPLLMAIGLLIMSLGHIVIASGFTGNLYVGFVIVGICYGSQLSLMPTIISDIFGLQHMGTIYNTINIAGSIGSYILSVKVIGYMYDKEASATDDFCSGKHCFMTSFLIMAAVAFLGSLVAIVLFFRTRKFYQLLVQARAVQDFSKQ 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48273843 48277986 + evm.model.ptg000008l.201 HCH8g1334 550432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1334 543 CDD MFS_Mch1p_like 13 513 - -
HCH8g1334 543 SUPERFAMILY MFS general substrate transporter 222 526 IPR036259 -
HCH8g1334 543 Gene3D MFS general substrate transporter like domains 209 520 IPR036259 -
HCH8g1334 543 SUPERFAMILY MFS general substrate transporter 10 205 IPR036259 -
HCH8g1334 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 528 - GO:0016020(PANTHER)
HCH8g1334 543 Pfam Nodulin-like 13 268 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1334 HCH-Chr8:48273843 HCH8g1336 HCH-Chr8:48289562 3.10E-147 dispersed
HCH8g1333 HCH-Chr8:48268150 HCH8g1334 HCH-Chr8:48273843 9.30E-232 tandem
HCH8g1334 HCH-Chr8:48273843 HCH8g1335 HCH-Chr8:48278304 7.70E-231 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1334 - - - 0.0