Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1336 ATGGAAAGATCAGGGTTAAACAACAAATGGGTATCGACAATATCCAGCATATGGATTCAATGCACAAGTGGGTCTCTCTATACCTTCTCCATCTACTCTCAAACCCTCAAATCCACTCAGCGCTACGATCAATCCACTTTAGATACTGTCTCTGTTTTTAAGGATGTCGGTGTCAACTGCGGTGTTCTTTCCGGCTTTCTCTACCACTACGCCGCCGGATACGGGGGTCACCGTGGGCCGTGGATGGTCCACTTGGCCGGAGCAATTCAGTGTTTCTTAGGTTATTTCCTTATCTGGGCTGCCGTTGCTGGGGTCTTTCCTAGGCCGCTGCCGGTTCCCGCCATGTGTTTGTTTATGTTAGTGGCGGCTCATGCTCAGAGCTTTTTCAACACGGCTAACGTTGTCACTGGTGTTAGGAACTTCCCTAATTACAGTGGGACGATTGTCGGAATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATATGAGACTATGTTTAATGAGCAACCTACTTCATTTCTTCTGATGCTGGCATTATTACCTACCTTTAATTCCTTATTGTTCATGTGGTTTGTGAGAATTCATAATACAGATGATGGGATTGAGAGAGAGTATCTTAATACCTTATCAATGATTACTCTTCTGGTTGCTGCTTACCTCATGTTCAAGATAATTCTAGAGCATATCTTTACCTTCCAATTCTCTCTACATGTTGCTACATTTGTTCTTCTTTTGATATTGCTTGCATCCCCTCTATATATTGTAATCAGGACCCAGCAGAGAGAGTCCACTAGGAATTTGCAGACTTTCGTCGCTGAGAGTGACCAACTGATTGATCAATCCTACCAGCTCGATTCTAAAAAAGTGTATCGTGAAAACTCGGATTTTAACAATGAACAAACGGTGCAATCTCAAGAAGACATGAACCTTTTGCAAGCTTTGCAAACAATAGAATTCTGGATACTGTTCTTCGCAATGGCTTGTGGGATGGGAACAGGATTAGCTACGGTGAATAATATCAGTCAGATAGGATTATCTCTCGGTTACACAAGTTCAGAGATAAGTACTTTGGTAGCCCTGTGGAGCATCTGGAATTTTATTGGTCGTTTTGGAGCCGGATACGTATCAGACTATTACCTGCATTCGAAAGGATGGGCTAGACCATTATTCATGTTCATCACTCTAGCAACCATGAGTATTGGACATGTAGTAATCGCCTCTGGTTTGCTGGGTGCTCTTTCTGCTGGTTCAGTTTTAGTAGGTGTTTGTTATGGCTCTCAATGGTCTCTAATGCCCACAATCACTTCTGAATTATTTGGTGTAGTACACATGGGTACTATATTCAATGCTATTACCATAGCAAGTCCTATTGGATCATACTTATTTTCAGTTAGAGTTGTTGGGTATATATATGACAAAGAAGTATCAGGTGAAGGAAATACTTGTAATGGAACTTACTGCTTCATGCTATCATTTCTGATCATGGCCTTTGCTACCCTTCTCGGCTCTCTCGCGGCGCTCGGCTTGTTTTTCTGGACAAGAAGTTTTTACAATCAAGTTCTTTTCAGAAGGATTCAACATTCTTCAAGGGAATAA 1611 41.9 MERSGLNNKWVSTISSIWIQCTSGSLYTFSIYSQTLKSTQRYDQSTLDTVSVFKDVGVNCGVLSGFLYHYAAGYGGHRGPWMVHLAGAIQCFLGYFLIWAAVAGVFPRPLPVPAMCLFMLVAAHAQSFFNTANVVTGVRNFPNYSGTIVGIMKGFLGLSGAILIQVYETMFNEQPTSFLLMLALLPTFNSLLFMWFVRIHNTDDGIEREYLNTLSMITLLVAAYLMFKIILEHIFTFQFSLHVATFVLLLILLASPLYIVIRTQQRESTRNLQTFVAESDQLIDQSYQLDSKKVYRENSDFNNEQTVQSQEDMNLLQALQTIEFWILFFAMACGMGTGLATVNNISQIGLSLGYTSSEISTLVALWSIWNFIGRFGAGYVSDYYLHSKGWARPLFMFITLATMSIGHVVIASGLLGALSAGSVLVGVCYGSQWSLMPTITSELFGVVHMGTIFNAITIASPIGSYLFSVRVVGYIYDKEVSGEGNTCNGTYCFMLSFLIMAFATLLGSLAALGLFFWTRSFYNQVLFRRIQHSSRE 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48289562 48291671 + evm.model.ptg000008l.199 HCH8g1336 550434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1336 536 Gene3D MFS general substrate transporter like domains 210 521 IPR036259 -
HCH8g1336 536 SUPERFAMILY MFS general substrate transporter 16 199 IPR036259 -
HCH8g1336 536 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 523 - GO:0016020(PANTHER)
HCH8g1336 536 Pfam Nodulin-like 9 261 IPR010658 -
HCH8g1336 536 CDD MFS_Mch1p_like 9 503 - -
HCH8g1336 536 SUPERFAMILY MFS general substrate transporter 220 519 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1334 HCH-Chr8:48273843 HCH8g1336 HCH-Chr8:48289562 3.10E-147 dispersed
HCH8g1335 HCH-Chr8:48278304 HCH8g1336 HCH-Chr8:48289562 9.60E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1336 - - - 0.0