Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1341 ATGGATCATCCACTCGTCAATGAAGCTTCTTTTTCCGCTGCAAACCCATCTGCTTACACCTTAGCTTCCATCTGGCCTTTTGCCGGGGAACAAGCCGGTGCCGGTGCCGGTGCTGCCGCTGCCTTGGGCCTCCGAATGGCTAATTTCGGTCAGAATCTTGGTGGGTTTCTTGAAAGCTCCGTGAATCGTGATGGATCAATAGAGGAATCGACGGTGACGGAGCAAAGTGGCGGTGGCGGCGGCGGCGGTGGGAGGAAGAGGAAGGATGTTAGATCCGAGGATGAGTCTTCTAAATTGGTTTCTACTAGCAGTGCTAATCAATTGAGTAACCCAAATGGTAAACGGGTGAAAGCAGTGAAATCCAGAGATGAAAATCGTGATTTAAAAGCTGAAGTCGAAGCTAACTCAGCAGATGGTAACCAACCAGATGAGCAAAGTCCTAAACCTTCTGAACCCCCAAAAGATTACATTCATGTGAGAGCGAGAAGGGGTCAAGCTACTGATAGCCATAGTTTGGCAGAAAGAGCCAGAAGAGAGAAGATCAGTGAGAGGATGAAAATTCTACAAGACTTGGTTCCGGGTTGTAATAAGGTTATTGGAAAATCACTTGTCCTTGATGAGATAATAAATTATATCCAATCATTGCAACGTCAGGTTGAGTTCCTCTCTATGAAACTTGAAGCTGTGAATTCAAGGATGAACATGAGCCCTAGCATTGAAGGATTTACTGTAAAGGATATTTGTAATCCGCCATATGATGCAGCAGGAATATTATACGGCTCACAAGCAGCAAGGGAGTATACTCAAGGTGCACAACCTGAATGGCTACATATGCAGATTGGTGGAGGTTTTGAAAGAACAACTTAG 867 45.44 MDHPLVNEASFSAANPSAYTLASIWPFAGEQAGAGAGAAAALGLRMANFGQNLGGFLESSVNRDGSIEESTVTEQSGGGGGGGGRKRKDVRSEDESSKLVSTSSANQLSNPNGKRVKAVKSRDENRDLKAEVEANSADGNQPDEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKSLVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSPSIEGFTVKDICNPPYDAAGILYGSQAAREYTQGAQPEWLHMQIGGGFERTT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48313935 48317231 + evm.model.ptg000008l.194 HCH8g1341 550439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1341 288 SMART finulus 171 221 IPR011598 GO:0046983(InterPro)
HCH8g1341 288 Coils Coil 212 232 - -
HCH8g1341 288 Gene3D - 162 239 IPR036638 GO:0046983(InterPro)
HCH8g1341 288 MobiDBLite consensus disorder prediction 116 133 - -
HCH8g1341 288 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 243 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH8g1341 288 MobiDBLite consensus disorder prediction 64 155 - -
HCH8g1341 288 CDD bHLH_AtBPE_like 155 234 - -
HCH8g1341 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983(InterPro)
HCH8g1341 288 MobiDBLite consensus disorder prediction 97 114 - -
HCH8g1341 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 235 IPR036638 GO:0046983(InterPro)
HCH8g1341 288 FunFam Basic helix-loop-helix transcription factor 162 234 - -
HCH8g1341 288 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g0939 HCH-Chr7:37872082 HCH8g1341 HCH-Chr8:48313935 5.90E-37 dispersed
HCH8g1341 HCH-Chr8:48313935 HCH8g1514 HCH-Chr8:49298340 5.30E-29 dispersed
HCH8g1341 HCH-Chr8:48313935 HCH10g1202 HCH-Chr10:42953550 9.40E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34080 PF00010 HLH 4.50E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1341 - - - 0.0