Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1345 ATGGTTTCTTCATCTTCATCTCAGAAGAAAACTCTCCACTCAATCTTGGCCGCCAATCTCACAAAACTCACAATCCCATCATCATCATCTTCTTCTTCCTCCTCATTTTCCTCCTCCGCCGCCGCTGGCGGCCACCATGACTTCGATTTCTCCGACGTATTTGGTCCCACAAACCCTTCCTCTCCATCAGCCACTTCTTTTCAAGGGGACCCACAAAACCATAAACAACTCCAAGTTCAGATAATCCATAACAGATCCCACTCTTTTGTGGGTCCCTCTCCCCGTTTCACTTCCCCTTCTTCTCTTCCTTTCTACCAAGATTTTGATTCTCAAAGTGATGAAGAAGAGGAAGAGGAAATCTCTGATAGAAATGGGATTCATAAGGAAAAGCAGATATTAGATGAGAGTGAAATTGTAGAAAGAAAAATTGGGGTTGGAGATTTTGATATCATTAGACTAGTGGGGAAAGGGGCTTTTGGGAAAGTTTTTTTGGTGAGGAAAAAAGGAAATTTTGAAGGAAATGGTGATAGTAATGATGGGCTTTATGCTATGAAAGTGATGAGGAAAGATACTATTATAAAGAAGAATCATGTTGATTATATGAAGGCTGAGAGAGATATTCTTACTAAAGTTTCTCATCCTTTCATTGTTCAATTACGTTTTTCTTTTCAGACCAAATCAAAACTTTATTTGATACTTGATTTCATAAATGGGGGGCATCTCTTTTATCATTTGTATCGGCAGGGGATCTTCAGTGAGGATCAAGCAAGGGTTTATGCAGCTGAGATTGTATCGGCTGTTTCGCATCTTCACAGCTGCGGTATTGTGCATCGGGATCTCAAGCCTGAGAACATTCTCATGGATGCTGATGGACATGTTATGCTAACGGATTTTGGACTCTCCAAGGAAATTGATGAATTAAGTAGGTCTAATTCAATGTGTGGAACCACAGAATATATGGCTCCGGAAATTTTGCTTTCTAAAGGGCACAACAAAGATGCTGATTGGTGGAGCATTGGTGTCCTCCTGTATGAAATGCTTAGTGGCCAGCCACCATTCACACATGCTAATAGAAAGAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAACTTCCTCCATACCTTAGTACTGAAGCTCACTCTTTGCTAAAAGGGCTGTTACAGAAGGAACCATCTAAAAGATTAGGAAGCGGGCCCAATGGAGGGGATGAGGTAAAAAATCATAAATGGTTTCAACAAGTCAACTGGAAGAAATTGGAATCTAGAGGGCTGCTCCCAAAATTCAAGCCTGATGTAAATGGAAAAGACTGCACAGCGAATTTTGATCGTTGTTGGACGACAATGCCGGCAGATGACTCACCAGCTCCCACCCCGACGGATGGTAACCATTTCCAGGGCTTTACTTATATTGCTCCTAACCCTTGGCTTTCATCATCTGGATAG 1446 41.42 MVSSSSSQKKTLHSILAANLTKLTIPSSSSSSSSSFSSSAAAGGHHDFDFSDVFGPTNPSSPSATSFQGDPQNHKQLQVQIIHNRSHSFVGPSPRFTSPSSLPFYQDFDSQSDEEEEEEISDRNGIHKEKQILDESEIVERKIGVGDFDIIRLVGKGAFGKVFLVRKKGNFEGNGDSNDGLYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRFSFQTKSKLYLILDFINGGHLFYHLYRQGIFSEDQARVYAAEIVSAVSHLHSCGIVHRDLKPENILMDADGHVMLTDFGLSKEIDELSRSNSMCGTTEYMAPEILLSKGHNKDADWWSIGVLLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPYLSTEAHSLLKGLLQKEPSKRLGSGPNGGDEVKNHKWFQQVNWKKLESRGLLPKFKPDVNGKDCTANFDRCWTTMPADDSPAPTPTDGNHFQGFTYIAPNPWLSSSG 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48336948 48339042 + evm.model.ptg000008l.190 HCH8g1345 550443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1345 481 PANTHER RIBOSOMAL PROTEIN S6 KINASE 113 474 - -
HCH8g1345 481 ProSiteProfiles Protein kinase domain profile. 148 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 Gene3D Phosphorylase Kinase; domain 1 147 454 - -
HCH8g1345 481 FunFam Non-specific serine/threonine protein kinase 236 431 - -
HCH8g1345 481 SUPERFAMILY Protein kinase-like (PK-like) 145 474 IPR011009 -
HCH8g1345 481 MobiDBLite consensus disorder prediction 49 74 - -
HCH8g1345 481 Pfam Protein kinase C terminal domain 433 470 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 CDD STKc_AGC 154 412 IPR045270 GO:0004674(InterPro)|GO:0005524(InterPro)
HCH8g1345 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 Gene3D Transferase(Phosphotransferase) domain 1 236 431 - -
HCH8g1345 481 ProSiteProfiles AGC-kinase C-terminal domain profile. 413 480 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 Pfam Protein kinase domain 150 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 SMART pkinase_C_6 413 472 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 SMART serkin_6 148 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1345 481 ProSitePatterns Protein kinases ATP-binding region signature. 154 185 IPR017441 GO:0005524(InterPro)
HCH8g1345 481 MobiDBLite consensus disorder prediction 54 74 - -
HCH8g1345 481 FunFam Non-specific serine/threonine protein kinase 145 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0014 HCH-Chr11:661138 HCH8g1345 HCH-Chr8:48336948 2.10E-134 dispersed
HCH1g0716 HCH-Chr1:55997970 HCH8g1345 HCH-Chr8:48336948 2.30E-56 dispersed
HCH5g0701 HCH-Chr5:5062477 HCH8g1345 HCH-Chr8:48336948 5.90E-38 dispersed
HCH8g0627 HCH-Chr8:43070543 HCH8g1345 HCH-Chr8:48336948 7.70E-53 dispersed
HCH8g1102 HCH-Chr8:46809016 HCH8g1345 HCH-Chr8:48336948 5.30E-19 dispersed
HCH8g1345 HCH-Chr8:48336948 HCH9g0508 HCH-Chr9:3243154 2.80E-43 dispersed
HCH8g1345 HCH-Chr8:48336948 HCH7g0369 HCH-Chr7:2662668 9.10E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81730 PF00069 Pkinase 4.70E-71 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1345 K04688 - csv:101214867 758.059