Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1351 ATGGCTACGGTTGGAGAATTCTCGCCGCGAAATTTCTCCGACGAAGTTAGAGTTATTGATGATTCCAATCTTTGTTCACAGCAGCTTCATGTTCTTGCTGTTGATGATAGTCTCATTGATCGGAAAGTTATCGAGAGATTGCTTAAGATCTCTTCTTGTAAAGTTACGGCGGTGGAAAGTGGGAGAAGCGCTTTGCAATATCTTGGTTTGGAAGGAGATAATAGTTCAGTCCAATTCAATAGCTTGAAGGTGAATTTGATTATGACAGATTACTCCATGCCTGGTATGACCGGATATGAACTTCTCAAGAAGATTAAGGAATCATCTGCTTTCAGAGAGATCCCGGTTGTGATAATGTCATCAGAGAATATCTTGACTCGGATTGATAGTTGCTTGAAGGAAGGGGCTGAGGAATACATAGTGAAGCCTGTAAAACTATCTGATGTAAAACGTATAAAAGATGTCATCATGAAAGGGGAAGATGGAGAAAACATAGGGAAGAAAATAGGTCATAAGAGGAAGCTCCAACTTGGTTTTGACAACCCCTTATCGGATCCTCTGTCGTTATCTCCGTCACCGACTTTTGGTCATTGTCAAGGACTTGTGCAAGTTTCTCCTTCATCACCGTCGTCGACCATGTGTTCACTAAAGAAACCCAGATTGCTCAATGCTGATGAATCCAAACTAAGCATATGCAATTTGAATCGTTAA 711 40.93 MATVGEFSPRNFSDEVRVIDDSNLCSQQLHVLAVDDSLIDRKVIERLLKISSCKVTAVESGRSALQYLGLEGDNSSVQFNSLKVNLIMTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILTRIDSCLKEGAEEYIVKPVKLSDVKRIKDVIMKGEDGENIGKKIGHKRKLQLGFDNPLSDPLSLSPSPTFGHCQGLVQVSPSSPSSTMCSLKKPRLLNADESKLSICNLNR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48364891 48366359 - evm.model.ptg000008l.184 HCH8g1351 550449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1351 236 SMART REC_2 29 156 IPR001789 GO:0000160(InterPro)
HCH8g1351 236 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 202 IPR045279 GO:0009736(InterPro)
HCH8g1351 236 CDD REC_typeA_ARR 31 152 - -
HCH8g1351 236 ProSiteProfiles Response regulatory domain profile. 30 157 IPR001789 GO:0000160(InterPro)
HCH8g1351 236 SUPERFAMILY CheY-like 28 152 IPR011006 -
HCH8g1351 236 Gene3D - 28 179 - -
HCH8g1351 236 Pfam Response regulator receiver domain 31 149 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1283 HCH-Chr8:47985896 HCH8g1351 HCH-Chr8:48364891 1.40E-08 dispersed
HCH8g1351 HCH-Chr8:48364891 HCH9g1007 HCH-Chr9:8043156 5.00E-41 dispersed
HCH1g0993 HCH-Chr1:58024338 HCH8g1351 HCH-Chr8:48364891 4.10E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34082 PF00072 Response_reg 1.70E-20 CL0304 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1351 K14492 - csv:101214143 257.684