Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1353 ATGGCGATTTCTATACCTAGCCGGCAACTCTTTATTGATGGCGAGTGGAGAGAACCGGTTCTTCAAAAACGCATCCCAGTTATCAATCCCGCTACTGAAGAAATAATCGGATCTATTCCTGCTGCTACGGTAGAAGATGTAGAATTAGCTGTGAATGCTGCTAATAAAGCCCTTGCTAGAAACAAAGGGAAAGATTGGGCGAAAGCTTCTGGAGCTTTTCGTGCTAAGTATTTGCGTGCTATTGCTGCTAAGGTAACAGAGAGGAAGAATGAATTGGCAAAACTTGAAACGATAGATTGTGGAAAACCTCTGGAAGAAGCTGCATGGGATATTGATGATGTTGCTGGGTGCTTTGAGTACTATGCAGATCTTGCTGAAGGATTGGATGCAAAGCAGAAGGCTCCTGTTTCTCTTCCCATGGATTCATTCAAGAGCTATGTTCTTAAAGAACCCATTGGGGTGGTTGGGTTGATCACTCCTTGGAACTATCCTATGTTGATGGCTGCATGGAAAGTGGCCCCTGCCTTGGCTGCAGGGTGTGCTGCAATATTGAAGCCATCAGAATTGGCATCTGTCACCTGTTTGGAACTCGCTGAAATCTGTAAAGAAGTTGGCCTTCCTCCTGGTATTCTCAATGTTCTGACTGGATTGGGTCACGAAGCTGGTGCTCCTTTGGCATCTCATCCTCATGTTAACAAGATTGCATTTACTGGAAGTGGTGCTACTGGGAGCAAGATTATGACGGCCGCTGCCCAACTCGTCAAGCCTGTTACCATGGAGCTGGGTGGAAAAAGTCCTATTCTTATCTTCGAGGATATTGACCTTGATAAGGCTGCCGAATGGACGGCCTTTGGTGTCTTTTGGACAAATGGTCAGATTTGCAGTGCTACATCTCGTCTCCTTGTACATGAAAACATTGCTACTGAATTCTTGGACCGGCTCGTGCAATGGTGCAAGAATATTAAGATTTCAGATCCATTGGAAGAAGGTTGTAGGCTCGGTCCAGTTGTTAGTGCAGGGCAGTACGAGAAAGTATTGAAGTTTGTCTCTAATGCTGAGAATGAAGGTGCAAAGGTTCTATTTGGTGGAGTTCGCCCCAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATCATTTCTAATGTTACTACCTCCATGGAAATCTGGAGAGAAGAAGTCTTTGGACCTGTTTTGTGTGTGAAAACTTTTAGTTCCGAAGAGGAAGCTATTGAATTAGCGAATGATTCCCACTATGGGCTAGGGGCTGCTGTGATATCAGATGACTTAGAAAGATGTGAGCGCGTAACCAATGCTTTACAGGCAGGAATTGTGTGGATTAATTGCTCTCAACCTTGCTTCTGTCAAGCCCCATGGGGTGGTAACAAACGCAGTGGCTTTGGTCGAGAGTTGGGAGAATGGGGACTTGAAAATTATCTGACTGTAAAGCAGGTTACTCAATATGTATCCAATGAACCATGGGGATGGTACAAGTCTCCATCTAAACTGTAA 1512 44.91 MAISIPSRQLFIDGEWREPVLQKRIPVINPATEEIIGSIPAATVEDVELAVNAANKALARNKGKDWAKASGAFRAKYLRAIAAKVTERKNELAKLETIDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKAPVSLPMDSFKSYVLKEPIGVVGLITPWNYPMLMAAWKVAPALAAGCAAILKPSELASVTCLELAEICKEVGLPPGILNVLTGLGHEAGAPLASHPHVNKIAFTGSGATGSKIMTAAAQLVKPVTMELGGKSPILIFEDIDLDKAAEWTAFGVFWTNGQICSATSRLLVHENIATEFLDRLVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSNAENEGAKVLFGGVRPKHLKKGYFVEPAIISNVTTSMEIWREEVFGPVLCVKTFSSEEEAIELANDSHYGLGAAVISDDLERCERVTNALQAGIVWINCSQPCFCQAPWGGNKRSGFGRELGEWGLENYLTVKQVTQYVSNEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48373517 48377259 - evm.model.ptg000008l.182 HCH8g1353 550451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1353 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
HCH8g1353 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 273 - -
HCH8g1353 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
HCH8g1353 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491(InterPro)
HCH8g1353 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
HCH8g1353 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
HCH8g1353 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
HCH8g1353 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
HCH8g1353 503 CDD ALDH_F10_BADH 27 487 - -
HCH8g1353 503 Pfam Aldehyde dehydrogenase family 19 485 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1520 HCH-Chr4:11621546 HCH8g1353 HCH-Chr8:48373517 5.80E-47 dispersed
HCH8g1353 HCH-Chr8:48373517 HCH8g1377 HCH-Chr8:48506955 4.20E-98 dispersed
HCH8g1353 HCH-Chr8:48373517 HCH4g0009 HCH-Chr4:88079 4.40E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1353 K00130 - csv:101213657 909.827