Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1360 ATGTTGGTTCATTGCATAGTCTTGTCGTGTATGTCGTGGAGTTTAATGATGTCTCAGAAAAGAAACCCAGATGAAGATGATGGCAACGGTTCGTCCGATGCTCCTCATATTCCTTCTCCTGATGATAAACGTAGAAAGTTTTCGCCCAGCAGTTTGGTTCGTGACGCGCTGTTATGGCAATCAATGCAACAGTTCTTGGAGCCAATGATTCGCAAAGTGGTAAAAGAGGAGGTTGAATCAGCACTAATGAAGTATACAAACAGTATGCAAAGGAATGATGAAAATGACGGGAAAGAAATCTATTCTTCCGGGTTGAGATGCTTTAAATTGAAGTTCAAAACCGATCTTTCTCTACCGGTATTTACTGGAGCTCGCATTGAAGGAACAGATGGTTCCACCTTGACGGTAGCTTTGGTTGATACTCTAACTGGGGAAATTGTTGACAGTGGACCTCAATCCTCAGCCAAAGTCGAAATTGTAGTGCTTGAGGGTGATTTTGAAGGTGGAGGCGATGATTGTACTGTAGAGGATTTTAGAAATAATATTGTAAGAGAGAGGGAAGGAAAGAAACCACTTCTTACAGGAGATACATTTGTGAATCTCAAAAATGGCGTTGGTTCGGTAGGTGAGATTTCGTTCACTGATAATTCCAGCTGGACTAGAAGCCGTAGATTCCGGCTGGGTGCAAAAATTATTGATGACAATGATGGTACAAGAGTACGAGAAGCTAAAACTTTATCATTTGTCGTCAGGGATCACCGCGGAGAATTGTACAAGAAGCACTACCCTCCATCTCTGCAGGATGAAGTATGGAGATTGCTAAAAATTAGCAAAGATGGAGCTTTTCATAAACGTCTGAGCTGTGAGAACATCAATACAGTGCAGGAATTCCTAACTCAACTCTACATAGATTCTTCAAGGCTTCGTAATATCCTTGGCACTGGTATGTCTGCAAAAATGTGGGAAGCTACGATCGAGCATGCACAGACATGTATGCTAGATAAGAAGATTTACTCATACAAACCTCACGGTTCGGAACAAAAAAGTAGCGTGGTCTTTAATGTCGTAGGACAAGTGATGGGACTACTTTCAGATTGGCAGTACGTTCCCATAGATAAGCTATCTGAAACTGAAAAGGCTGATGCTCACAACTTGGTTATCTCTGCATACAAACACTGGCATGAAGTTGAATCTATTGATGATGAAACTTCTCTTGTAGGTGGCTCTTCTCACTCCATCAATTTCCTTTACTCCCCGAGCTCGCCTGCGGAGGAACATTCTTATGGTAGCAAGTTCTTGGCTTCTCAAAAATTTGGTGGATTTGATTACACACCAACAAATATCTATTCTTCCGACATCATTTCATCCATAGGTTCTATTGGAAATGTTAGTGGCTTGGATGATCACGCCTTGCAGGGTATTGATACAATGGTTGTTAGTTATGACGATATTCCGGGTTTCTCAAATTTTGCCAACTCTTCCCTGATCTGCGATTCCGGGCCTCTAACTTCATCGTTCCATGATGTGGATCCTCTGCAAGTTTTAGATTGTGGTTTTCAATCTAGCATGAGTTTTGAATCATGTGGTAGTGGTAGTGGTACTACTCTCAAAGGTTTGCCGCGTGCTCAGATTAGATGGACTAAGCTAATCAGTGTGCTAAAATTGTTCTTGTTGATGAAACACGTAATTAGGAAAAACAAACCCGTATTAATCGAGAGATTCAAAGATACTGTACAGAGTCGTGGAAAGAAAAAATTGGATTATGGTTGA 1770 41.24 MLVHCIVLSCMSWSLMMSQKRNPDEDDGNGSSDAPHIPSPDDKRRKFSPSSLVRDALLWQSMQQFLEPMIRKVVKEEVESALMKYTNSMQRNDENDGKEIYSSGLRCFKLKFKTDLSLPVFTGARIEGTDGSTLTVALVDTLTGEIVDSGPQSSAKVEIVVLEGDFEGGGDDCTVEDFRNNIVREREGKKPLLTGDTFVNLKNGVGSVGEISFTDNSSWTRSRRFRLGAKIIDDNDGTRVREAKTLSFVVRDHRGELYKKHYPPSLQDEVWRLLKISKDGAFHKRLSCENINTVQEFLTQLYIDSSRLRNILGTGMSAKMWEATIEHAQTCMLDKKIYSYKPHGSEQKSSVVFNVVGQVMGLLSDWQYVPIDKLSETEKADAHNLVISAYKHWHEVESIDDETSLVGGSSHSINFLYSPSSPAEEHSYGSKFLASQKFGGFDYTPTNIYSSDIISSIGSIGNVSGLDDHALQGIDTMVVSYDDIPGFSNFANSSLICDSGPLTSSFHDVDPLQVLDCGFQSSMSFESCGSGSGTTLKGLPRAQIRWTKLISVLKLFLLMKHVIRKNKPVLIERFKDTVQSRGKKKLDYG 589
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 48407912 48414381 + evm.model.ptg000008l.175 HCH8g1360 550458
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1360 589 Pfam Calmodulin binding protein central domain 266 331 IPR046830 -
HCH8g1360 589 PANTHER OS02G0177800 PROTEIN 18 427 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
HCH8g1360 589 MobiDBLite consensus disorder prediction 20 47 - -
HCH8g1360 589 Pfam Calmodulin binding protein C-terminal domain 336 399 IPR046829 -
HCH8g1360 589 Pfam Calmodulin binding protein-like N-terminal domain 108 253 IPR046831 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0063 HCH-Chr8:3345311 HCH8g1360 HCH-Chr8:48407912 2.50E-47 dispersed
HCH8g1015 HCH-Chr8:46188838 HCH8g1360 HCH-Chr8:48407912 1.60E-89 dispersed
HCH8g1360 HCH-Chr8:48407912 HCH10g0903 HCH-Chr10:11543919 2.10E-56 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1360 - - - 0.0