Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1373 ATGCTGTCCAGTTCTTGCTTGAGTTTGTTGGAATTATCATCTGGGGACGTGTTGAATTTCCCTCCTACGCCGAGAACTATTCCTAGGGTGATGACTGCCTCTGGAGTTTTTTCTGATCTACAAGATGAAAGTAAAGATGTAGATTTAGATGGTTCCTCCTCGAAATGCCGGGAGAGACAAATAATAGTGGCAAATTTCCTTCCTATTCATGCTAAAAAAGATCCGAACACGGGAAGATGGAACTTCAGTTTTGATGAGGATGCCCTTTTGCTACAATTGAAGGATGGTTTCTCGTCGGATGTAGATGTTTTATATGTTGGAACTCTAAAGGTTGATGTAGATGTCAGTGAGCAAGAGGAAATTTCTCAGAAACTATGGGAGGAATTCAAATGTGTACCGACTTTCATTCCTGCATATCTTCAAAAACAGTATTATCATGGATTCTGCAAACAGCATTTGTGGCCACTTTTTCATTACATGATGCCGATTTCCCCGGATCATGGCACTCGCTTTGATAGAAATCTTTGGCAGGCATATCTTTCTGCAAACAAAAGATTTGCAGATAAAATTATGGAAGTAATCAATCCTGAAGAAGATTATGTCTGGATTCATGACTATCACCTTATGGTTCTCCCTACGTTTTTGAGAAAACGTTTCAGTCGAATTAAGCTTGGATTCTTCCTTCACAGCCTGTTTCCCTCATCAGAAATCTATCGGACTCTGCCCATTAGAGATGAAATTCTGAAAGCATTACTAAATGCAGACCTAATTGGTTTTCATACGTTTGATTATGCTCGTCACTTCCTGTCTTGCTGTAGTAGACTGCTTGGTTTGGAATATGAATCTAAGCGAGGCTATCTCACGCTCGAGTATTTTGGCCGCACAATATACATCAAGATTTTGCCTGTGGGAGTTCATATGGGTCGACTTGAATCTGCATTAAATCTACCCTGCACTTCAATCAAGGCTAAACAGATCAAAGAAAACCTCCAAGGAAAGAAGCTTATTGTTGGTGTTGATGACATGGACATATTTAAAGGTATTGGTCTAAAGTTACTATCTGTGGAACAGCTATTGAATCAGCATCCAGAGTTGCGGGGCAACGTTGTTTTGGTGCAAATTCTAAATCCGGCACGTAGCACTGGGAAAGATGTCCAGGAAGCAAAAAGAGAGACTTATAACATAACCAAAAGAATAAACGATGCTTTTAGTTTTCCGGGGTATGAACCAGTAATCTTGATTGACCATCCAATTCCTTTTCATGAGAAGATTGCATACTATTCCTTAGCAGAATGTTGCATTGTAAATGCTGTGAGGGATGGTATGAACTTAGTTCCATATGAGTATATTGTTTGCAGACAGGGAACTTCGCAAATGGATGAAGCTTTGGAAAACTCCCCAAATTTACCTCATACTAGTACACTTGTAGTGTCAGAATTCATTGGTTGTTCACCATCTTTAAGTGGTGCAATCAGGGTGAATCCATGGGATATTGATGCTGTAGTCGATGCACTATATTTGGCTGTCACAATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAACATTACCGATATGTCAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTCACAGGATTTGGAGCGAGCATGCAGAGAACACTACAGAAAACGATGCTGGGGCATTGGTTTTGGTATGAGTTTCAGAATTCTGTCACTCTCGCCAAGTTTCAGGAAGCTTTCCATTGACTATATTGGCTCTGCATATAAGAGTGCTAATAGGAGGGCGGTATTTTTGGATTATGATGGGACCGTGGTTTCCCAAGCTTCCTTGGTGAAAACTCCTTCTCCTGAAGTCATTTCCATCATGAACAACCTTTGCATGGATTCCAAGAACACTGTGTTTATAGTTAGTGGTAGGGGGAAAGATTCTCTCTCTTCATGGTTTGCTTCATGCAAGAATCTTGGTATCGCTGCCGAACATGGATACTACTTGAGGTGGAGTAGCGATGCCGAGTGGGAAATTAGCCCATTAGCTGAAGACTTTGGATGGAAAGGAATTGCAGAACCTGTGATGAAATTGTACACAGAAGCAACTGATGGCTCATACATAGAGACCAAGGAGAGTGCCTTGGTATGGCACCATCAAGATGCCGATCCTTATTTTGGTTCATGCCAGGCCATGGAGCTCTTGGATCATCTCGAAAACGTCCTTGCAAACGAACCTGTGGTTGTTAAAAGAGGTCAGCATATTGTTGAAGTGAAACCACAGGGGATTACTAAAGGATTAGTTGCAGAGAGAATTCTTTCCACAATGCTCAGCTCTGAGAAAGCCCCCGATTTTATCTTGTGCATCGGGGATGATCGATCTGATGAAGACATGTTCGAGAGCATATCAAGTACAAGCTGTAGTTCATCTCTTGCTACTGCTCCCAAGATCTTTGCATGTACCGTGGGTCAAAAACCTAGCAAAGCCAAGTACTATTTAGATGATACTGCTGACGTCTTGACATTGCTTAAAAGCCTGGCCACCCCTTCTAGCCGTAAGTCAAGATGGAGTTTAGAAGCTCCCGTTTTGTTTGAGGATGATATTTGA 2583 41.77 MLSSSCLSLLELSSGDVLNFPPTPRTIPRVMTASGVFSDLQDESKDVDLDGSSSKCRERQIIVANFLPIHAKKDPNTGRWNFSFDEDALLLQLKDGFSSDVDVLYVGTLKVDVDVSEQEEISQKLWEEFKCVPTFIPAYLQKQYYHGFCKQHLWPLFHYMMPISPDHGTRFDRNLWQAYLSANKRFADKIMEVINPEEDYVWIHDYHLMVLPTFLRKRFSRIKLGFFLHSLFPSSEIYRTLPIRDEILKALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLESALNLPCTSIKAKQIKENLQGKKLIVGVDDMDIFKGIGLKLLSVEQLLNQHPELRGNVVLVQILNPARSTGKDVQEAKRETYNITKRINDAFSFPGYEPVILIDHPIPFHEKIAYYSLAECCIVNAVRDGMNLVPYEYIVCRQGTSQMDEALENSPNLPHTSTLVVSEFIGCSPSLSGAIRVNPWDIDAVVDALYLAVTMPALEKQLRHEKHYRYVSSHDVAYWARSFSQDLERACREHYRKRCWGIGFGMSFRILSLSPSFRKLSIDYIGSAYKSANRRAVFLDYDGTVVSQASLVKTPSPEVISIMNNLCMDSKNTVFIVSGRGKDSLSSWFASCKNLGIAAEHGYYLRWSSDAEWEISPLAEDFGWKGIAEPVMKLYTEATDGSYIETKESALVWHHQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQHIVEVKPQGITKGLVAERILSTMLSSEKAPDFILCIGDDRSDEDMFESISSTSCSSSLATAPKIFACTVGQKPSKAKYYLDDTADVLTLLKSLATPSSRKSRWSLEAPVLFEDDI 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48475020 48477900 - evm.model.ptg000008l.162 HCH8g1373 550471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1373 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
HCH8g1373 860 NCBIfam HAD-IIB family hydrolase 593 793 IPR006379 -
HCH8g1373 860 SUPERFAMILY HAD-like 591 839 IPR036412 -
HCH8g1373 860 NCBIfam trehalose-phosphatase 588 839 IPR003337 GO:0005992(InterPro)
HCH8g1373 860 Gene3D Glycogen Phosphorylase B; 321 529 - -
HCH8g1373 860 Gene3D - 720 850 IPR023214 -
HCH8g1373 860 Gene3D - 590 696 IPR023214 -
HCH8g1373 860 CDD GT20_TPS 61 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH8g1373 860 Gene3D Glycogen Phosphorylase B; 48 320 - -
HCH8g1373 860 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
HCH8g1373 860 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
HCH8g1373 860 FunFam Trehalose-6-phosphate synthase 2 674 753 - -
HCH8g1373 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 840 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(InterPro)|GO:0005992(PANTHER)|GO:0070413(PANTHER)
HCH8g1373 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
HCH8g1373 860 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0005992(InterPro)
HCH8g1373 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
HCH8g1373 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
HCH8g1373 860 CDD HAD_TPP 592 831 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1128 HCH-Chr6:45863708 HCH8g1373 HCH-Chr8:48475020 0.00E+00 dispersed
HCH7g0126 HCH-Chr7:833987 HCH8g1373 HCH-Chr8:48475020 0.00E+00 dispersed
HCH1g1015 HCH-Chr1:58160433 HCH8g1373 HCH-Chr8:48475020 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1373 K16055 - csv:101209676 1512.66