Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1375 ATGCATAGCATCAATCCCTACACCCATTTTGCCTCCTCTCGCTTCCACAAGTCCTTATTTCTTCGCCGGAAAGTCCCTTGGTGGTATCAAATCCTCGAACCGGATTCCGAATTCGTCTTCCGATGGAACCGAATCTTTCTCGTCACCTGCTTAATCGCTCTCTTTGTCGACCCTCTTTACTTCTATCTCCCCGTCATTGGTGGCCCTGCCTGTATGCGCTTCAACACCGGTTTCGGCATTGTTGTCACCTTCTTTCGCACCATTGTCGATTTGTTTTCAATGTTTCATATGATCATGAAGTTCCGCACCGCCTTTGTTGCGCCGAGTTCTCGGGTTTTCGGCCGTGGTGAGCTGGTTATGGACTCTAAGGCCATTGCTATCCGCTACTTGAAGTCGGATTTTCTCATTGATCTCGCTGCTACACTTCCCTTACCGCAGATTGTTATTTGGTTTGTGATTCCAGCATTCAAAAACCCAACAGCTGCTCATGCCAACCACACTCTTGCTCTGATTGTTCTCCTTCAGTATGCCCCTCGACTGTTTGTTATATTTCCTCTGAACCAACAGATTAATAAGACTACAGGGGCAATCGCCAAAACTGCTTGGGCTGGAGCAGCTTATAATCTCCTCCTCTATTTGCTAGCTAGCCATGTTATAGGAGCTGCATGGTATGTGGCATCCATTCAGCGACAGCACGAGTGTTGGAAGATAGAATGCCGGAAGGAGATGAATACCACACGTTCTCCTTCTTGTAATATGTTTTTTTTGGACTGCGATAGTCTTGACCAGCCAGAACGACGTGCATGGCTGAGAATTACTAAAGTACTTACTAACTGCGATGCATTAAATGACGACAATAATTTTGAGTTTGGAATGTTTGCTGATGCATTTACTGATGAAGTTGCCTCATCGAATTTTATTGAGAAATACTTCTACTGCTTTTGGTGGGGTTTGAAGAGTTTAAGTTCATATGGACAAAATTTAACGACAAGCACTTTTAGTGGTGAAATTTTATTTAGCATTATGATTTGCTCATTGGGTTTGGTTCTCTTCTCACACCTCATAGGGCAGGTGCAGAGCTATCTGCAATCTACAACGGCTAGACTTGAAGAATGGAGAGTGAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAATTACCCCTTCATCTGCAAGAACGAGTTCGTCGTTTCGTTCAATACAAATGGATTGCTACTAGAGGTGTAGATGAAGAATCAATCCTGCGCTCTTTACCATTGGACATTCGTCGTCAAATTCAGAGACATCTTTCTCTTGCCCTTGTTCGTCGTGTCCCTTTTTTTGCACAAATGGATGCTCAATTATTGGATGCCATATGTGAACGTTTGGTTTCGTCTTTGAGTACTAAAGACACGTATATAATCAGGGAGGGAGATCCAGTAAACGAGATGCTTTTCATCATTAGAGGCCAGCTAGAGAGCTCCACAACCAATGGAGGCAGGTCAGGATTCTTCAATTCCATCACCCTCAGACCTGGTGACTTCTGTGGTGAAGAGTTGCTGACATGGGCCTTGGTGCCATCACCAAGCCTAAACTTTCCGTCCTCAACTCGAACCGTAAGATCCCTCACCGAAGTCGAGGCCTTCGCACTTCGAGCTGAAGATCTCAAGTTTGTTGCTAGCCAATTCAAACGCCTCCACAGCAAGAAACTTCAGCATGCTTTCAGATACTATTCTCACCAATGGAGGACTTGGGGAGCTTGCTTCATACAAGCTGCTTGGAGACGGTATGTTAAACGAAAGCTAGCGATGGAGTTGGCAAGACAAGAAGAATTCTATTGCTCAACTTTCTTGGATCAAGACTACAACCAGGGAAGTGAATTAGCTGGTGAAGAAAGTGAAAACAATAGAGTGGGAGGTTTTGCTCAAAACCTTGGAGTAACATTCTTGGCTTCAAAATTTGCAGCAAATACCAGAAGAGGGGCTAATCAGAAAGTATCTGGTCTTAACCCTGATGCCACTAGCTTGAAAATGCCAAAATTGTTTAAGCCAGAGGAACCTGATTTCTCTGCTTTCCAGGAGGATAGTTAA 2073 44.38 MHSINPYTHFASSRFHKSLFLRRKVPWWYQILEPDSEFVFRWNRIFLVTCLIALFVDPLYFYLPVIGGPACMRFNTGFGIVVTFFRTIVDLFSMFHMIMKFRTAFVAPSSRVFGRGELVMDSKAIAIRYLKSDFLIDLAATLPLPQIVIWFVIPAFKNPTAAHANHTLALIVLLQYAPRLFVIFPLNQQINKTTGAIAKTAWAGAAYNLLLYLLASHVIGAAWYVASIQRQHECWKIECRKEMNTTRSPSCNMFFLDCDSLDQPERRAWLRITKVLTNCDALNDDNNFEFGMFADAFTDEVASSNFIEKYFYCFWWGLKSLSSYGQNLTTSTFSGEILFSIMICSLGLVLFSHLIGQVQSYLQSTTARLEEWRVKRRDTEEWMRHRQLPLHLQERVRRFVQYKWIATRGVDEESILRSLPLDIRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVSSLSTKDTYIIREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALVPSPSLNFPSSTRTVRSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYVKRKLAMELARQEEFYCSTFLDQDYNQGSELAGEESENNRVGGFAQNLGVTFLASKFAANTRRGANQKVSGLNPDATSLKMPKLFKPEEPDFSAFQEDS 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48496899 48500790 + evm.model.ptg000008l.160 HCH8g1375 550473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1375 690 Gene3D - 38 365 - -
HCH8g1375 690 FunFam Cyclic nucleotide-gated ion channel 1 439 557 - -
HCH8g1375 690 SMART cnmp_10 441 569 IPR000595 -
HCH8g1375 690 CDD CAP_ED 441 572 IPR000595 -
HCH8g1375 690 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 661 - -
HCH8g1375 690 SUPERFAMILY Voltage-gated potassium channels 34 363 - -
HCH8g1375 690 Gene3D Helix hairpin bin 367 431 - -
HCH8g1375 690 MobiDBLite consensus disorder prediction 655 690 - -
HCH8g1375 690 ProSiteProfiles cAMP/cGMP binding motif profile. 441 571 IPR000595 -
HCH8g1375 690 Gene3D Jelly Rolls 439 559 IPR014710 -
HCH8g1375 690 Pfam Ion transport protein 42 368 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH8g1375 690 Pfam Cyclic nucleotide-binding domain 464 553 IPR000595 -
HCH8g1375 690 SUPERFAMILY cAMP-binding domain-like 370 566 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1375 HCH-Chr8:48496899 HCH9g0582 HCH-Chr9:3892858 2.40E-184 dispersed
HCH8g1375 HCH-Chr8:48496899 HCH9g0157 HCH-Chr9:926005 1.70E-275 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1375 K05391 - csv:101209760 1152.89