Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g1376 | ATGGCTGCTGCTGCTCGTAGGGGAATCTGCTCTTTACTTTCTCCTTCTTTATCTTCTTCTTCTTCTACTGGATTTGCTTCTCTTCTTCTCTCTCAAGGAAGAAATTCAAGTTTTAAGGGAAAAATCAACAGATTTAGCACATCTGCTGTAGCTGAGGAGCTTGTCACTCCCCAAGTTCAGATAAATTACACTCAGCATCTGATTAATGGGCAGTTTGTAGACGCTGCATCAGATAAAATATTTCCGACCTGCGACCCTCGTACCGGGGAAGTGATTGCTCATGTTGCTGAAGGCGATGCTGAAGATATCAACCGTGCGGTATCGGCAGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACTGCTTATGAACGATCGAGGATATTATTGCGGTTTGCAGATTTGGTTGAGAAACATAGTAGTGAACTTGCAGCATTAGAGACATGGGATAACGGGAAAACTTATCAACAAGCTGCTGAAACCGAATTACCATCGATCGTGCGCCTATTGCACTATTATGCAGGATGGACTGATAAAATCCATGGTTTAACCGCTCCGGCTGATGGAAACCATCATTTGGAGACACAGCATGAACCAATTGGTGTTGTAGGACAAATCATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCCCTGGCTTGTGGAAATACCATTGTACTAAAGACTGCTGAGCAAACACCTTTGACTGCTCTTTATGCAGCAAAGCTATTCCATGAGGCTGGTCTTCCTCCAGGGGTTCTGAATGTTGTTTCTGGCTATGGTCCTACTGCTGGTGCTGCGCTTGCAAGCCATATGGATGTGGACAAGCTAGCTTTCACTGGATCGACAGATACTGGAAAAATTGTACTTAAATTGGCTGCAGAAAGCAATCTTAAGCCGGTGACGCTTGAGCTTGGAGGGAAATCACCTTTCATAGTGTGTGAGGATGCAGATGTAGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTCTTCTTCAATCAGGGGCAATGTTGTTGTGCTGGATCTCGCACTTACGTGCACGAGAGTGTATACGACGAGTTCGTTGAGAAATCAAAGGCGCGCGCCAACAGTCGTGTTGTTGGTGACCCTTTCAGGAAGGGTGTCGAGCAAGGGCCGCAGATTGACTCAGAGCAATTTGAGAAAGTCCTTGGATACATAAAATCTGGTATTGAGAGTAATGCTACTTTGGAATGTGGAGGTGGCAGAATTGGCAACAAAGGATTCTTTATCCAGCCAACAGTTTTCTCAAATGTTCATGAGGATATGTCGATAGCGCAGGATGAAATCTTTGGTCCAGTACAATCCATCTTGAAATTCAGGGACATCCATGAAGTAATCCAAAGGGCAAATAATACTCGTTATGGTTTAGCTGCTGGAGTTTTCACCAAGAACATAGACACAGCCAACACGCTAACACGAGCATTGAGAGTTGGGACCGTGTGGATCAACTGCTACGACGTTTTCGACGCTTCAATTCCTTTCGGCGGATATAAGATGAGTGGCATTGGGAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTGCAGGTAAAGGCTGTTGTTACTCCTCTGAAGAATCCAGCATGGTTGTGA | 1635 | 45.2 | MAAAARRGICSLLSPSLSSSSSTGFASLLLSQGRNSSFKGKINRFSTSAVAEELVTPQVQINYTQHLINGQFVDAASDKIFPTCDPRTGEVIAHVAEGDAEDINRAVSAARKAFDEGPWPKMTAYERSRILLRFADLVEKHSSELAALETWDNGKTYQQAAETELPSIVRLLHYYAGWTDKIHGLTAPADGNHHLETQHEPIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYAAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTDTGKIVLKLAAESNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTYVHESVYDEFVEKSKARANSRVVGDPFRKGVEQGPQIDSEQFEKVLGYIKSGIESNATLECGGGRIGNKGFFIQPTVFSNVHEDMSIAQDEIFGPVQSILKFRDIHEVIQRANNTRYGLAAGVFTKNIDTANTLTRALRVGTVWINCYDVFDASIPFGGYKMSGIGREKGIYSLQNYLQVKAVVTPLKNPAWL | 544 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 48501650 | 48505371 | + | evm.model.ptg000008l.159 | HCH8g1376 | 550474 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g1376 | 544 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 316 | 505 | IPR016163 | GO:0016620(InterPro) | |
| HCH8g1376 | 544 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 338 | 349 | IPR016160 | GO:0016491(InterPro) | |
| HCH8g1376 | 544 | Pfam | Aldehyde dehydrogenase family | 72 | 534 | IPR015590 | GO:0016491(InterPro) | |
| HCH8g1376 | 544 | SUPERFAMILY | ALDH-like | 58 | 538 | IPR016161 | GO:0016491(InterPro) | |
| HCH8g1376 | 544 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 58 | 536 | - | GO:0004029(PANTHER) | |
| HCH8g1376 | 544 | CDD | ALDH_F2BC | 61 | 536 | - | - | |
| HCH8g1376 | 544 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 310 | 317 | IPR029510 | GO:0016491(InterPro) | |
| HCH8g1376 | 544 | FunFam | Aldehyde dehydrogenase, putative | 506 | 532 | - | - | |
| HCH8g1376 | 544 | FunFam | Mitochondrial aldehyde dehydrogenase 2 | 316 | 505 | - | - | |
| HCH8g1376 | 544 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 78 | 534 | IPR016162 | GO:0016491(InterPro) | |
| HCH8g1376 | 544 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 68 | 341 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g1747 | HCH-Chr6:49978929 | HCH8g1376 | HCH-Chr8:48501650 | 2.30E-58 | dispersed | |
| HCH8g1376 | HCH-Chr8:48501650 | HCH8g1377 | HCH-Chr8:48506955 | 1.40E-293 | tandem | |
| HCH2g0957 | HCH-Chr2:52943966 | HCH8g1376 | HCH-Chr8:48501650 | 3.10E-91 | transposed | |
| HCH4g0009 | HCH-Chr4:88079 | HCH8g1376 | HCH-Chr8:48501650 | 5.10E-243 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH8g1376 | K00128 | - | csv:101209430 | 917.916 |