Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1377 | ATGGCTGTTCGTAGGGGAGTCTGCTCTTTACTTTCTCGTTCTGTATCTTCTTCTTCTTCTTCTTCTCTTCTTCTCTCTCAAGGAAGAAATTCAAGTCTTCAGGGAAAAATCAATAGATTTAGCACATCTGCTGTAGCAGAGGAGCTTGTCACTCCCCCAGTTCAGATAAATTACACTCAGCATCTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGTAAAACATTTCCGACATACGACCCTCGTACCGGGGAAGTGATTGCTCATATTGCTGAAGGCAATGCTGAAGATATCAACCTTGCGGTATCGGCAGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACTGCTTATGAACGATCGAGGGTATTATTGCGGTTCGCAGATTTGGTTGAGAAACATAGTACTGAACTTGCAGCATTAGAGACATGGGATAACGGGAAACCTTATCAACAAGCTGCTGAAACCGAATTACCAACGGTCGTGCGCCTATTTCACTATTATGCCGGCTGGGCGGATAAAATCCACGGTTTAACTGTTCCGGCTGATGGAAAGCATCATGTGCAGACACTGCATGAACCAATTGGTGTTGCAGGACAAATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGCCCTGCCCTAGCTTGTGGAAATACCATTGTACTAAAGACTGCTGAGCAAACACCTTTGACTGCTCTTTATGCAGCAAAGCTATTCCATGAGGCTGGTCTTCCTCCAGGGGTTCTGAATATTGTTTCTGGCTATGGTCCTACTGCCGGTGCTGCGCTTGCAAGCCATATGGATGTGGACAAGCTAGCTTTCACTGGATCAACAGAAACTGGAAAAATTGTGCTTAAATTAGCAGCAGAAAGCAATCTTAAGCCGGTGACACTTGAGCTTGGAGGGAAATCGCCTTTCATAGTGTGTGAGGATGCAGATGTAGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTCTTCTTCAATCAGGGGCAATGTTGCTGTGCTGGATCACGTACTTACGTGCACGAGCGTGTATATGACGAGTTTGTTGAGAAAGCAAAGGCACGCGCCAACAGACGTATTGTTGGTGACCCTTTCAAGAAGGGTGTCGAGCAAGGGCCTCAGATTGACTCAGAGCAGTTTGAGAAAGTCCTTGGTTACATAAAATCTGGTATTGAGAGTAACGCTACTTTGGAATGTGGAGGTGACAGACTTGGCAATAAAGGATTCTTTATCCAGCCAACAGTTTTCTCAAATGTTCATGAGAATATGTCGATAGCACAGGATGAAATCTTTGGGCCAGTACAATCCATCTTGAAATTCAAGGACCTTCATGAAGTAATCCAAAGGGCAAACACAACTCGTTATGGTTTAGCTGCCGGAGTTTTCACCAAGAACATTGACACAGCCAACACGTTAACACGAGCATTAAGAGCTGGGACCGTGTGGATCAACTGCTTTGACGTTTTCGACGCTGCTATTCCTTTCGGCGGATATAAGATGAGTGGCATTGGGAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTGCAGGTAAAGGCGGTTGTTACTCCTCTGAAGAATCCAGCATGGTTGTGA | 1620 | 45.31 | MAVRRGVCSLLSRSVSSSSSSSLLLSQGRNSSLQGKINRFSTSAVAEELVTPPVQINYTQHLINGQFVDAASGKTFPTYDPRTGEVIAHIAEGNAEDINLAVSAARKAFDEGPWPKMTAYERSRVLLRFADLVEKHSTELAALETWDNGKPYQQAAETELPTVVRLFHYYAGWADKIHGLTVPADGKHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYAAKLFHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTETGKIVLKLAAESNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKAKARANRRIVGDPFKKGVEQGPQIDSEQFEKVLGYIKSGIESNATLECGGDRLGNKGFFIQPTVFSNVHENMSIAQDEIFGPVQSILKFKDLHEVIQRANTTRYGLAAGVFTKNIDTANTLTRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLQNYLQVKAVVTPLKNPAWL | 539 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 48506955 | 48510651 | + | evm.model.ptg000008l.158 | HCH8g1377 | 550475 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1377 | 539 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 333 | 344 | IPR016160 | GO:0016491(InterPro) | |
HCH8g1377 | 539 | CDD | ALDH_F2BC | 56 | 531 | - | - | |
HCH8g1377 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 63 | 527 | IPR016162 | GO:0016491(InterPro) | |
HCH8g1377 | 539 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 309 | 498 | IPR016163 | GO:0016620(InterPro) | |
HCH8g1377 | 539 | FunFam | Aldehyde dehydrogenase, putative | 501 | 527 | - | - | |
HCH8g1377 | 539 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 63 | 324 | - | - | |
HCH8g1377 | 539 | SUPERFAMILY | ALDH-like | 55 | 533 | IPR016161 | GO:0016491(InterPro) | |
HCH8g1377 | 539 | FunFam | Mitochondrial aldehyde dehydrogenase 2 | 311 | 500 | - | - | |
HCH8g1377 | 539 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 305 | 312 | IPR029510 | GO:0016491(InterPro) | |
HCH8g1377 | 539 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 47 | 531 | - | GO:0004029(PANTHER) | |
HCH8g1377 | 539 | Pfam | Aldehyde dehydrogenase family | 67 | 529 | IPR015590 | GO:0016491(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0009 | HCH-Chr4:88079 | HCH8g1377 | HCH-Chr8:48506955 | 3.70E-249 | dispersed | |
HCH8g0766 | HCH-Chr8:44285862 | HCH8g1377 | HCH-Chr8:48506955 | 2.20E-171 | dispersed | |
HCH8g1353 | HCH-Chr8:48373517 | HCH8g1377 | HCH-Chr8:48506955 | 4.20E-98 | dispersed | |
HCH8g1376 | HCH-Chr8:48501650 | HCH8g1377 | HCH-Chr8:48506955 | 1.40E-293 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH8g1377 | K00128 | - | rcu:8289031 | 933.324 |