Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1377 ATGGCTGTTCGTAGGGGAGTCTGCTCTTTACTTTCTCGTTCTGTATCTTCTTCTTCTTCTTCTTCTCTTCTTCTCTCTCAAGGAAGAAATTCAAGTCTTCAGGGAAAAATCAATAGATTTAGCACATCTGCTGTAGCAGAGGAGCTTGTCACTCCCCCAGTTCAGATAAATTACACTCAGCATCTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGTAAAACATTTCCGACATACGACCCTCGTACCGGGGAAGTGATTGCTCATATTGCTGAAGGCAATGCTGAAGATATCAACCTTGCGGTATCGGCAGCTCGCAAGGCTTTTGATGAGGGACCATGGCCAAAGATGACTGCTTATGAACGATCGAGGGTATTATTGCGGTTCGCAGATTTGGTTGAGAAACATAGTACTGAACTTGCAGCATTAGAGACATGGGATAACGGGAAACCTTATCAACAAGCTGCTGAAACCGAATTACCAACGGTCGTGCGCCTATTTCACTATTATGCCGGCTGGGCGGATAAAATCCACGGTTTAACTGTTCCGGCTGATGGAAAGCATCATGTGCAGACACTGCATGAACCAATTGGTGTTGCAGGACAAATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGCCCTGCCCTAGCTTGTGGAAATACCATTGTACTAAAGACTGCTGAGCAAACACCTTTGACTGCTCTTTATGCAGCAAAGCTATTCCATGAGGCTGGTCTTCCTCCAGGGGTTCTGAATATTGTTTCTGGCTATGGTCCTACTGCCGGTGCTGCGCTTGCAAGCCATATGGATGTGGACAAGCTAGCTTTCACTGGATCAACAGAAACTGGAAAAATTGTGCTTAAATTAGCAGCAGAAAGCAATCTTAAGCCGGTGACACTTGAGCTTGGAGGGAAATCGCCTTTCATAGTGTGTGAGGATGCAGATGTAGATAAGGCTGTGGAGCTTGCTCATTTTGCTCTCTTCTTCAATCAGGGGCAATGTTGCTGTGCTGGATCACGTACTTACGTGCACGAGCGTGTATATGACGAGTTTGTTGAGAAAGCAAAGGCACGCGCCAACAGACGTATTGTTGGTGACCCTTTCAAGAAGGGTGTCGAGCAAGGGCCTCAGATTGACTCAGAGCAGTTTGAGAAAGTCCTTGGTTACATAAAATCTGGTATTGAGAGTAACGCTACTTTGGAATGTGGAGGTGACAGACTTGGCAATAAAGGATTCTTTATCCAGCCAACAGTTTTCTCAAATGTTCATGAGAATATGTCGATAGCACAGGATGAAATCTTTGGGCCAGTACAATCCATCTTGAAATTCAAGGACCTTCATGAAGTAATCCAAAGGGCAAACACAACTCGTTATGGTTTAGCTGCCGGAGTTTTCACCAAGAACATTGACACAGCCAACACGTTAACACGAGCATTAAGAGCTGGGACCGTGTGGATCAACTGCTTTGACGTTTTCGACGCTGCTATTCCTTTCGGCGGATATAAGATGAGTGGCATTGGGAGGGAGAAGGGAATTTACAGCCTCCAAAACTACTTGCAGGTAAAGGCGGTTGTTACTCCTCTGAAGAATCCAGCATGGTTGTGA 1620 45.31 MAVRRGVCSLLSRSVSSSSSSSLLLSQGRNSSLQGKINRFSTSAVAEELVTPPVQINYTQHLINGQFVDAASGKTFPTYDPRTGEVIAHIAEGNAEDINLAVSAARKAFDEGPWPKMTAYERSRVLLRFADLVEKHSTELAALETWDNGKPYQQAAETELPTVVRLFHYYAGWADKIHGLTVPADGKHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYAAKLFHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTETGKIVLKLAAESNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKAKARANRRIVGDPFKKGVEQGPQIDSEQFEKVLGYIKSGIESNATLECGGDRLGNKGFFIQPTVFSNVHENMSIAQDEIFGPVQSILKFKDLHEVIQRANTTRYGLAAGVFTKNIDTANTLTRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLQNYLQVKAVVTPLKNPAWL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48506955 48510651 + evm.model.ptg000008l.158 HCH8g1377 550475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1377 539 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491(InterPro)
HCH8g1377 539 CDD ALDH_F2BC 56 531 - -
HCH8g1377 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 63 527 IPR016162 GO:0016491(InterPro)
HCH8g1377 539 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620(InterPro)
HCH8g1377 539 FunFam Aldehyde dehydrogenase, putative 501 527 - -
HCH8g1377 539 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 63 324 - -
HCH8g1377 539 SUPERFAMILY ALDH-like 55 533 IPR016161 GO:0016491(InterPro)
HCH8g1377 539 FunFam Mitochondrial aldehyde dehydrogenase 2 311 500 - -
HCH8g1377 539 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491(InterPro)
HCH8g1377 539 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 531 - GO:0004029(PANTHER)
HCH8g1377 539 Pfam Aldehyde dehydrogenase family 67 529 IPR015590 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0009 HCH-Chr4:88079 HCH8g1377 HCH-Chr8:48506955 3.70E-249 dispersed
HCH8g0766 HCH-Chr8:44285862 HCH8g1377 HCH-Chr8:48506955 2.20E-171 dispersed
HCH8g1353 HCH-Chr8:48373517 HCH8g1377 HCH-Chr8:48506955 4.20E-98 dispersed
HCH8g1376 HCH-Chr8:48501650 HCH8g1377 HCH-Chr8:48506955 1.40E-293 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1377 K00128 - rcu:8289031 933.324