Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1378 ATGAAAGAAAACAATGATGGGTTCGTAAGAGCAGATCAAATTGATCTTAAAAGCTTAGATGAACAGCTTGAAAGGCATCTAAATAGAGCTTTAACAATGGAAAAAAACAAGAAGAAAGATGAAGACGGAAATAGCTTTCTTGGTCTCGCAGCTTCTTCCACAGCTGCTATTCCTCGTAGTAAGTCCACAAAAATCACTGCCAAAGAAAGACAAGAGTGGGAAATCGACCCTTCTAAGCTCATCATCAAGTCTGTCATTGCACGTGGCACTTTTGGCACCGTTCATCGTGGTGTTTATGATGGCCTAGATGTTGCCGTCAAGTTACTGGATTGGGGAGAGGAAGGTCATAGGACAGAAGCTGAGATTGCTTCGCTAAGGGCAGCTTTTAAACAGGAAGTTGCCGTGTGGCATAAACTCGATCATCCCAATGTTACTAAGTTTATCGGGGCAACAATGGGCTCAGCAGAGTTACAGATACAGACCGAAAATGGTCTAATTGGCATGCCAAGTAACATATGTTGTGTTATTGTGGAATATCTTCCTGGGGGCGCCTTGAAATCTTATCTCATAAAGAACAGGAGAAGGAAACTAGTTTTCAAGGTGGTTGTCCAGCTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCGCAGAAAATTGTTCACAGAGATGTGAAGACAGAAAACATGCTATTGGATAAAACACGTACGGTCAAAATTGCTGATTTTGGTGTTGCTCGTGTGGAGGCTTCAAATCCTAATGACATGACAGGGGAGACTGGGACACTCGGTTACATGGCTCCGGAGGTTCTCAATGGCAACCCATACAACAGGAAGTGTGATGTGTACAGTTTTGGTATCTGTCTGTGGGAGATTTATTGCTGTGACATGCCGTATCCCGACCTTAGTTTCTCTGAAGTGACTTCTGCTGTGGTCCGTCAGAATCTGAGGCCAGAGATACCAAGGTGTTGCCCTAGTTCTCTAGCAAATGTGATGAAGCGTTGCTGGGATGCCACCCCAGACAAGCGACCGGAGATGGATGAAGTAGTTTCCATGATAGAGGCGATCGACACATCGAAAGGTGGAGGTATGATTCCTGTTGATCAAGCTCAGGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAA 1152 44.53 MKENNDGFVRADQIDLKSLDEQLERHLNRALTMEKNKKKDEDGNSFLGLAASSTAAIPRSKSTKITAKERQEWEIDPSKLIIKSVIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLDHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVIVEYLPGGALKSYLIKNRRRKLVFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMIEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48511990 48514995 - evm.model.ptg000008l.157 HCH8g1378 550476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1378 383 SUPERFAMILY Protein kinase-like (PK-like) 58 353 IPR011009 -
HCH8g1378 383 Gene3D Transferase(Phosphotransferase) domain 1 180 370 - -
HCH8g1378 383 PRINTS Tyrosine kinase catalytic domain signature 215 233 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 PRINTS Tyrosine kinase catalytic domain signature 177 190 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 PRINTS Tyrosine kinase catalytic domain signature 281 303 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 PRINTS Tyrosine kinase catalytic domain signature 325 347 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 CDD STKc_MAP3K-like 86 354 - -
HCH8g1378 383 Pfam Protein tyrosine and serine/threonine kinase 82 353 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 ProSiteProfiles Protein kinase domain profile. 80 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 SMART serkin_6 80 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 Gene3D Phosphorylase Kinase; domain 1 68 163 - -
HCH8g1378 383 FunFam Serine/threonine-protein kinase HT1 180 365 - -
HCH8g1378 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1378 383 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 56 355 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
HCH8g1378 383 FunFam Kinase suppressor of Ras 1 69 164 - -
HCH8g1378 383 Coils Coil 16 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH7g1242 HCH-Chr7:45244153 HCH8g1378 HCH-Chr8:48511990 5.30E-151 dispersed
HCH8g1378 HCH-Chr8:48511990 HCH9g0516 HCH-Chr9:3311571 2.10E-41 dispersed
HCH8g1427 HCH-Chr8:48871440 HCH8g1378 HCH-Chr8:48511990 2.60E-41 dispersed
HCH8g1378 HCH-Chr8:48511990 HCH8g1383 HCH-Chr8:48541098 6.80E-56 proximal
HCH8g1378 HCH-Chr8:48511990 HCH9g0151 HCH-Chr9:875802 3.20E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81731 PF07714 PK_Tyr_Ser-Thr 1.10E-62 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1378 - - - 0.0