Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1380 ATGGCTGCTCGTGGCGTCGATTTCAAGTGGTATGACGGATTTTTCTTATCGATGCTCGCAACGAGCGTAGTTGTAGTTTCGATCAATTGGAAGAAGTATCATACTTGTGTACATCCCTTGCATATATGGATTGTGGTTGATTATACTACCGTGTTTGTTTTTCGCTTACTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTTCTTACCTTGCTTGCTCTTCTGCTGTATCCATTTCTTTGGGCTTGGACTGTCATTGGTACTTTGTGGTATAGAGAAGCTAATAAATGTCTTCCTGCAGACGGTCAGAAATGGGGATTCCTTATTTGGTTGCTTTTTAGCTACTGTGCACTTCTATGCATTGCTTGCATGTCATTGGGGAAGTGGTTGACTCGCAGACAAGCACTCTTGTTACGTGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTGTTGGTTGACATGATTCGGGTGCCAGATTGGGCTTTCGAAGCTGCAGGACTAGAAACAAGGGTAATGGGTCAAGATGCTGCTGCCTATCATCCCGGACTTTACTTGACTCCGGCTCAGAGGGAAGCTGTGGAAGCACTTATCGAGGAACTCCCAAAATTCAGGTTAAAGGCCGTTCCAACAGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTCTCCCATGTGCTCATAATTTCCATGTAGGATGTATTGATGAGTGGCTTCGACTGAATGTGAAATGCCCTCGATGTCGTTGCTCGGTCTTCCCAAATCTTGACCTCAGTGCTCTATCTAATCTTCGTGCTGATACGGAAAGACCATCTGTGAGTGTTGTTGTTACAGCCAACCGTTATATGGGATCTCAACCTGCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGACCTGTTCGGGCAGAAAATGCTGGCGTGCACAGTGATTTAGAGGCTGCTCGTGCTTTGGAAGCTGCTGAGAATGGGGCTGCAGGCATGGCTGTCTGTGACCCATCAATATCAGAACTGTCTCCTGTAAGACCCTTGCCCTCGGGTCAGTCCACATTACAACCATAG 1149 46.82 MAARGVDFKWYDGFFLSMLATSVVVVSINWKKYHTCVHPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLTLLALLLYPFLWAWTVIGTLWYREANKCLPADGQKWGFLIWLLFSYCALLCIACMSLGKWLTRRQALLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADTERPSVSVVVTANRYMGSQPASQSYLVRLQGLLRPVRAENAGVHSDLEAARALEAAENGAAGMAVCDPSISELSPVRPLPSGQSTLQP 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48524137 48527046 + evm.model.ptg000008l.155 HCH8g1380 550478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1380 382 SMART ring_2 235 275 IPR001841 -
HCH8g1380 382 Pfam Ring finger domain 234 276 IPR001841 -
HCH8g1380 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
HCH8g1380 382 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
HCH8g1380 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
HCH8g1380 382 SUPERFAMILY RING/U-box 217 284 - -
HCH8g1380 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g0895 HCH-Chr8:45312402 HCH8g1380 HCH-Chr8:48524137 4.00E-09 dispersed
HCH3g0333 HCH-Chr3:2097053 HCH8g1380 HCH-Chr8:48524137 6.00E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1380 K16284 - csv:101208939 669.848