Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH8g1383 | ATGAAGAGTTTTAATTGGTTTAAGCCAAATTCCATCAATGGGAAGCCTGAGAGAAGGCTTTCTCTTGGAGAGTATAAAAGGGCTGTGTCATGGTCCAAGTACTTGGTTTCATCTGGGGCTAAGATTAAAGGAGAGGGTGAAGAAGAATGGAGTGCTGATATGACCCAACTGTTTATTGGTTATAAGTTTGCTTCAGGGAGATATAGCAGGATTTATAGAGGGATATATAACCATAAAGATGTGGCAATTAAGCTGATAAGCCAACCTGAGGAAGATGAAAACTTGGCTAATTTGCTCGAGAATCGGTTCGTTTCGGAGGTGGCATTGTTGTTCCGATTACGCCATCCGAATATTATCACTTTTATTGCTGCTTGTAAGAAGCCTCCTGTGTTTTGCATTATAACTGAGTTCATGTCTGGGGGTTCATTGAGAAAATACCTTCATCAGCAGGAGCCACATTCTGTCCCTCTTAACTTGGTCCTGAAACTAGCACTCGATATTTCACGAGGGATGCAGTATCTTCATTCTCAGGGCATTCTCCACAGGGATCTCAAATCTGAAAACCTACTGCTCGGGGAGGATATGCTCGTGAAGGTATCGGATTTTGGTATCTCGTGCTTAGAATCTCATTGCGGAAGTGCAAAGGGATTCACAGGTACTTACCGATGGATGGCACCGGAAATGATCAAAGAAAAACAGCATACGAAGAAAGTCGATGTATATAGTTTTGGTATTGTTCTATGGGAGCTTTTGACTGCATTGACACCATTTGAGAACATGACTCCTGAACAAGCTGCATTTGCAGTTTGTCAGAAGAATGCAAGACCACCTTTGCCGTCTGCATGTCCCGTGGCACTCAGTCGACTCATAAACAGATGTTGGTCGAGCAATCCTGATAAGCGACCGCATTTTAACGAGATCATTTCGATTTTGGAAAGCTACGCTGAGGGCCTTGATCAGAATCCAGAGTTTTTCTCATCCTATAGACCTTCGCCTGATCGAATGGTTCCACGATGCCTATCGACGTGCATTGCTGGCCAAAGGTCTGCTTTCCTCAATGTCTAA | 1065 | 43.47 | MKSFNWFKPNSINGKPERRLSLGEYKRAVSWSKYLVSSGAKIKGEGEEEWSADMTQLFIGYKFASGRYSRIYRGIYNHKDVAIKLISQPEEDENLANLLENRFVSEVALLFRLRHPNIITFIAACKKPPVFCIITEFMSGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMLVKVSDFGISCLESHCGSAKGFTGTYRWMAPEMIKEKQHTKKVDVYSFGIVLWELLTALTPFENMTPEQAAFAVCQKNARPPLPSACPVALSRLINRCWSSNPDKRPHFNEIISILESYAEGLDQNPEFFSSYRPSPDRMVPRCLSTCIAGQRSAFLNV | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 48541098 | 48542553 | + | evm.model.ptg000008l.152 | HCH8g1383 | 550481 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH8g1383 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 135 | 148 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 260 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 173 | 191 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 219 | 229 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | PRINTS | Tyrosine kinase catalytic domain signature | 282 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | Gene3D | Phosphorylase Kinase; domain 1 | 45 | 139 | - | - | |
HCH8g1383 | 354 | SMART | serkin_6 | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | Gene3D | Transferase(Phosphotransferase) domain 1 | 140 | 329 | - | - | |
HCH8g1383 | 354 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 179 | 191 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | FunFam | Serine/threonine-protein kinase isoform 1 | 47 | 139 | - | - | |
HCH8g1383 | 354 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 57 | 312 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
HCH8g1383 | 354 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 311 | IPR011009 | - | |
HCH8g1383 | 354 | Pfam | Protein tyrosine and serine/threonine kinase | 62 | 310 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH8g1383 | 354 | CDD | STKc_MAP3K-like | 64 | 311 | - | - | |
HCH8g1383 | 354 | ProSiteProfiles | Protein kinase domain profile. | 57 | 315 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0190 | HCH-Chr10:1558820 | HCH8g1383 | HCH-Chr8:48541098 | 9.50E-80 | dispersed | |
HCH3g0334 | HCH-Chr3:2105615 | HCH8g1383 | HCH-Chr8:48541098 | 1.50E-174 | dispersed | |
HCH3g0654 | HCH-Chr3:4562086 | HCH8g1383 | HCH-Chr8:48541098 | 5.20E-90 | dispersed | |
HCH7g0439 | HCH-Chr7:3248409 | HCH8g1383 | HCH-Chr8:48541098 | 1.90E-70 | dispersed | |
HCH8g1383 | HCH-Chr8:48541098 | HCH9g0113 | HCH-Chr9:592760 | 2.20E-61 | dispersed | |
HCH8g1378 | HCH-Chr8:48511990 | HCH8g1383 | HCH-Chr8:48541098 | 6.80E-56 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81732 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-65 | CL0016 | HCH | PK |
Pathway information
