Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1383 ATGAAGAGTTTTAATTGGTTTAAGCCAAATTCCATCAATGGGAAGCCTGAGAGAAGGCTTTCTCTTGGAGAGTATAAAAGGGCTGTGTCATGGTCCAAGTACTTGGTTTCATCTGGGGCTAAGATTAAAGGAGAGGGTGAAGAAGAATGGAGTGCTGATATGACCCAACTGTTTATTGGTTATAAGTTTGCTTCAGGGAGATATAGCAGGATTTATAGAGGGATATATAACCATAAAGATGTGGCAATTAAGCTGATAAGCCAACCTGAGGAAGATGAAAACTTGGCTAATTTGCTCGAGAATCGGTTCGTTTCGGAGGTGGCATTGTTGTTCCGATTACGCCATCCGAATATTATCACTTTTATTGCTGCTTGTAAGAAGCCTCCTGTGTTTTGCATTATAACTGAGTTCATGTCTGGGGGTTCATTGAGAAAATACCTTCATCAGCAGGAGCCACATTCTGTCCCTCTTAACTTGGTCCTGAAACTAGCACTCGATATTTCACGAGGGATGCAGTATCTTCATTCTCAGGGCATTCTCCACAGGGATCTCAAATCTGAAAACCTACTGCTCGGGGAGGATATGCTCGTGAAGGTATCGGATTTTGGTATCTCGTGCTTAGAATCTCATTGCGGAAGTGCAAAGGGATTCACAGGTACTTACCGATGGATGGCACCGGAAATGATCAAAGAAAAACAGCATACGAAGAAAGTCGATGTATATAGTTTTGGTATTGTTCTATGGGAGCTTTTGACTGCATTGACACCATTTGAGAACATGACTCCTGAACAAGCTGCATTTGCAGTTTGTCAGAAGAATGCAAGACCACCTTTGCCGTCTGCATGTCCCGTGGCACTCAGTCGACTCATAAACAGATGTTGGTCGAGCAATCCTGATAAGCGACCGCATTTTAACGAGATCATTTCGATTTTGGAAAGCTACGCTGAGGGCCTTGATCAGAATCCAGAGTTTTTCTCATCCTATAGACCTTCGCCTGATCGAATGGTTCCACGATGCCTATCGACGTGCATTGCTGGCCAAAGGTCTGCTTTCCTCAATGTCTAA 1065 43.47 MKSFNWFKPNSINGKPERRLSLGEYKRAVSWSKYLVSSGAKIKGEGEEEWSADMTQLFIGYKFASGRYSRIYRGIYNHKDVAIKLISQPEEDENLANLLENRFVSEVALLFRLRHPNIITFIAACKKPPVFCIITEFMSGGSLRKYLHQQEPHSVPLNLVLKLALDISRGMQYLHSQGILHRDLKSENLLLGEDMLVKVSDFGISCLESHCGSAKGFTGTYRWMAPEMIKEKQHTKKVDVYSFGIVLWELLTALTPFENMTPEQAAFAVCQKNARPPLPSACPVALSRLINRCWSSNPDKRPHFNEIISILESYAEGLDQNPEFFSSYRPSPDRMVPRCLSTCIAGQRSAFLNV 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48541098 48542553 + evm.model.ptg000008l.152 HCH8g1383 550481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1383 354 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 Gene3D Phosphorylase Kinase; domain 1 45 139 - -
HCH8g1383 354 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 Gene3D Transferase(Phosphotransferase) domain 1 140 329 - -
HCH8g1383 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
HCH8g1383 354 PANTHER SERINE-THREONINE PROTEIN KINASE 57 312 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH8g1383 354 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
HCH8g1383 354 Pfam Protein tyrosine and serine/threonine kinase 62 310 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1383 354 CDD STKc_MAP3K-like 64 311 - -
HCH8g1383 354 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0190 HCH-Chr10:1558820 HCH8g1383 HCH-Chr8:48541098 9.50E-80 dispersed
HCH3g0334 HCH-Chr3:2105615 HCH8g1383 HCH-Chr8:48541098 1.50E-174 dispersed
HCH3g0654 HCH-Chr3:4562086 HCH8g1383 HCH-Chr8:48541098 5.20E-90 dispersed
HCH7g0439 HCH-Chr7:3248409 HCH8g1383 HCH-Chr8:48541098 1.90E-70 dispersed
HCH8g1383 HCH-Chr8:48541098 HCH9g0113 HCH-Chr9:592760 2.20E-61 dispersed
HCH8g1378 HCH-Chr8:48511990 HCH8g1383 HCH-Chr8:48541098 6.80E-56 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81732 PF07714 PK_Tyr_Ser-Thr 1.30E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1383 - - - 0.0