Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1394 ATGGAGGATCTTTATCGCCTCCACTCCATGACCGATTACTCCGATCAATCTTCTCCTGCACCACCGCAGCCGCCGATGGAGAATCTTGTATTTCCGGTTAATTGTCAAAACTATTCCAGTTCTGTTAATTCTGCAGATCATTTTAATCGGATTCCGTCTTTCGGATCGGACCCGTTAATCGCAGCTGAGATTCAAAAAACACGTTCTGCTCATGATAAGGAGGAGTCTTCCAGGGTTATTAGAGCTCAAATTACTTCGCATCCTCTTTATCCTAAGCTTCTTCAGGCTTTCATTGATTGCCAAAAGGTAGGTGCACCGCCGGAGATAGTTGATGTCATCGACGAAATCCATAGAGGATGTGACATCAGTAGAAGAGCAGCCGACGTTTCAACTTTCTTGGGTGCCGATCCCGAACTCGATGAATTCATGGAACTCTACTGCGGGATACTGGTAAAGTATAAGTCAGACCTTTCAACGCCTTTCGTTGAAGCAACTTCTTTCCTCAATAACATGGAAATGCAATTAAACTCACTTTGTAACGGCGGCGATCGAAGCCATTTTTCCGATGAAGGTGATGATTCATCTGAAGAGGATCCAAGTGCCGGAGAGGTAGAATTTCATCACTCTCGTCAGGCGGACGGAGATCGCGAACTCAAGGATAAACTTCTACGCAAGTACAGTGGTTATATCAGTAACTTGAAGCATGAATTCTCCAAAACGAAAAAGAAGGGAAAGCTACCAAAAGATGCAAGGCAAATCCTGCTTGACTGGTGGAACATCCATTATAAATGGCCTTACCCCACTGAGGCAGACAAAATTCAGCTGGCCAAATCAACGGGGCTGGACCCGAAGCAGATAAATAATTGGTTCATAAATCAGAGAAAACGGCATTGGAAACCATCAGAAAACATGCAATTTGCCGTTATGAATACTCTTTGCGGACCCCTTAGTGATGAATGA 960 44.27 MEDLYRLHSMTDYSDQSSPAPPQPPMENLVFPVNCQNYSSSVNSADHFNRIPSFGSDPLIAAEIQKTRSAHDKEESSRVIRAQITSHPLYPKLLQAFIDCQKVGAPPEIVDVIDEIHRGCDISRRAADVSTFLGADPELDEFMELYCGILVKYKSDLSTPFVEATSFLNNMEMQLNSLCNGGDRSHFSDEGDDSSEEDPSAGEVEFHHSRQADGDRELKDKLLRKYSGYISNLKHEFSKTKKKGKLPKDARQILLDWWNIHYKWPYPTEADKIQLAKSTGLDPKQINNWFINQRKRHWKPSENMQFAVMNTLCGPLSDE 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48650714 48655505 + evm.model.ptg000008l.141 HCH8g1394 550492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1394 319 Gene3D - 235 308 - -
HCH8g1394 319 MobiDBLite consensus disorder prediction 1 26 - -
HCH8g1394 319 SMART KNOX1_2 78 122 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH8g1394 319 CDD homeodomain 249 301 IPR001356 GO:0003677(InterPro)
HCH8g1394 319 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677(InterPro)
HCH8g1394 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 307 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH8g1394 319 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH8g1394 319 SMART KNOX2_2 129 180 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH8g1394 319 MobiDBLite consensus disorder prediction 182 215 - -
HCH8g1394 319 SMART HOX_1 239 304 IPR001356 GO:0003677(InterPro)
HCH8g1394 319 Pfam ELK domain 217 238 IPR005539 GO:0003677(InterPro)
HCH8g1394 319 SMART ELK_2 217 238 IPR005539 GO:0003677(InterPro)
HCH8g1394 319 MobiDBLite consensus disorder prediction 200 215 - -
HCH8g1394 319 Pfam KNOX1 domain 80 120 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH8g1394 319 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH8g1394 319 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677(InterPro)
HCH8g1394 319 SUPERFAMILY Homeodomain-like 239 312 IPR009057 -
HCH8g1394 319 Pfam KNOX2 domain 134 179 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0931 HCH-Chr10:12431527 HCH8g1394 HCH-Chr8:48650714 7.60E-69 dispersed
HCH7g0260 HCH-Chr7:1790952 HCH8g1394 HCH-Chr8:48650714 8.80E-65 dispersed
HCH1g1049 HCH-Chr1:58343048 HCH8g1394 HCH-Chr8:48650714 1.40E-94 wgd
HCH4g0036 HCH-Chr4:226759 HCH8g1394 HCH-Chr8:48650714 8.40E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34086 PF03791 KNOX2 8.00E-22 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1394 - - - 0.0