Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1403 ATGCTAATGCCTGTAAATCAATGGACCCTCTTATCTATCCTAATCCTCTGTTTTTCGCTCTTATTTCCATCCCTTCTTAGCACTTTTGCCATCAACTATCAGGGTCAAGCTCTGCTTATTTGGAAGCTAAGTTTGAATGGATCGATCGATGAGCTAAGTAATTGGGACCGCAACAACGAAACTCCATGTGGGTGGTTTGGAATCACTTGCAATTTTAATAAGGAAGTAGTGGAGTTGGAATTGAGGTATGTGAATTTAGCTGGTAAAGTTCCATCGAATTTTACTTCATTGTTGTCTTTGAAGAAGCTCGTCTTGTCCGGAACAAACCTCACCGGTTCGATACCGAAAGAGATCGGTGTTCTACGCGATTTGAGTACTTTGGACCTCAGTGATAATAGCCTAACTGGTGAAATTCCAAGTGAGATAGATGCATTGCTAAACCTCCAAGAGCTCCATCTCAATTCCAATAGGCTGGGAGGGTTAATTCCTGCGGGAATTGGGAATCTCACAAACTTAAAATTGCTGATTCTCTATGACAATCAGTTGAGTGGTGGAATTCCCAATAACATTGGAAAGTTGAAGAAGCTTGAAGTGATTAGAGCTGGTGGGAATAAGAATCTCCAAGGTTCTCTGCCACAAGAAATTGGTAACTGCACTAGTTTGGTAATTCTGGGTCTGGCTGAAACAAGCATCTCAGGCTTTCTTCCATTTAGTATTGGCTTGCTCAAGAAGCTCCAGACACTAGCAATCTACACTACTCTTCTCTCTGGCCAGATTCCTCCTGAACTCGGCGACTGCACTGAGCTCCAAAACGTCTATCTCTACGAAAACTCGCTCTCCGGCTCAATCCCGAGGACATTAGGAAGGTTACAGAATCTCCAAAGCCTCTTACTATGGCAGAACTATTTGGTCGGCGTCATACCACCAGAGCTTGGTAGCTGTAGCGAGTTATCGGTCATCGACATTTCGATGAATTCCATAACCGGAAGCATTCCTTCAACATTTGGGAATTTAACATTACTCCAAGAATTGCTACTCAGTGTGAATCAATTATCCGGTGAACTCCCAATAGAGATCGGGAATTGTCCGAGACTAACTCACATCGAGCTTGATAATAACGAACTAGGCGGTACCATTCCCTCTGAATTAGGCAATCTGACCAATCTCACATTGCTTTTCTTGTGGCAAAACAAGCTTGAAGGAAGTATCCCGTCCTCCATTTCCAATTGTCACAATCTTGAGGCCATTGATTTATCACTAAACAGCTTGACAGGGCCCATTCCTTCAGGAATCTTCCAAATGAAAACCCTAACCAAGCTTCTCCTCCTCTCCAACAATCTCTCCGGCGTGATATTGCCGACGATAGGTAATTGTTCGTCATTGATTCGCTTCCGAGCGAGTAACAACAAGCTCACAGGTGAAATTCCACCAGAGATTGGAAATTTGAAGAACTTGATTTTCCTAGACCTAGGAAACAATCGCCTCACTGGATCATTGCCTCCAGAGATTTCAGGATGTCAAAATTTGACATTTCTTGATTTACATTCCAATTCTCTATCGAGACCTCTTCCAGAAGATTTCTATCACCTTACTTCCCTCCAATTCGTCGATCTCTCAAATAACCTAATCGAAGGAACGCTAAATCCGAGTCTCGGATCTTTCAACTCGCTCACGAAACTCGTCCTTTCAAATAACGAATTCTCCGGAAATATACCTAACGAAATCGGTTCCTGCATTAAACTACAGTTATTAGATCTAAGCAGCAATCACATTTCAGGAAACATTCCGTCAAGCCTTGGCAAGATTCCGGCGCTCGAAATCGGTCTCAATCTAAGCCTAAACCAACTCTCCGGCGAGATTCCGCCAGAATTCGCCGGTTTAGACAGGCTCGGATCATTAGACCTCTCTCTCAACCAGCTCTCCGGCGACCTCCAGATTCTCGCGGACATGCAAAATCTCGTAATCCTCAATATATCGCACAACAATTTCTCGGGACGCGTACCAGAGACGCCATTCTTCACTAAGCTCCCTCTAAGCGTCCTCTCCGGAAACCCGGACTTATGCTTTACAGGCGATAAATGCGATGCCGAAAATCTCACGGGAAATTCTCGGCACACGTTAGCAGCTCGTGTGGCTATGGTGGTGCTATTGTGCGCGGCGTGCGCACTGCTACTGGCGGCGGTGTATATCATTCTGAAAGATAAACGAGCGTGGCGACGTGGCATTAGTGGGTCCCACGAAGAAAATCTAGACGATTTCGATAGTGACGTGGAAGTGGGCCCAGGCTGGGAAATAACACTATACCAGAAACTCGATTTTTCAATTTCCGATGTCGTGAAATGCCTGACGCCGGTCCACGTGATCGGGCGCGGCAGATCCGGAATCGTTTACCGGGCATGCATTCCCTCAGGTTTGTTAATTGCCGTTAAGAGATTTAATTCGTCGGAAAAGTTTTCGGCGGCGGCGTTTTCATCGGAAATCGCTACATTGGCGAGGATCCGGCACCGGAATATAGTGCGGTTATTAGGGTGGGGAGCTAACCGGAGGACGAAATTGTTGTTTTACGATTACTTGCCGAATGGAAATTTGGGCGCGTTGCTTCACGAAGGGAGTGTGCGAGTGGTGGTGGATTGGGAAACTCGGTTCAAGATAGCATTGGGAGTGGCCGAGGGATTAGCTTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGAGATGTGAAGGCCCATAATATACTGTTAGGGGATCGTTACGAGGCTTGTTTAGCGGATTTCGGGCTCGCCCGTTTAGTTGAAGATGGTCAAAACGGTTCGTCTTCTGTAAATCCTCAGTTTGCTGGTTCTTACGGCTATTTTGCGCCTGAATATGGATGCATGTTAAAAATCACAGAAAAGAGTGACGTCTACAGTTATGGAGTAGTTCTACTAGAGATAATAACAGGCAAAAAGCCTGTAGACCCTTCATTTCCTGAAGGCCAACATGTGATTCAATGGGTGAGGGAGCATCTAAAGAGGAAGAAGGATCCGGTTGAGATATTAGATCCGAAACTTCAAGGACAAACCGATACACAAATACAAGAAATCCTACAGACCCTTGGAATCTCTCTTCTCTGTACAAGCAATCGCCCCGAAGATCGACCGACAATGAAAGATGTCGCCGCGTTATTGAGAGAGATTCGACATGATCAACTCATGGCAGGCACTGAGGCAACTGATAAGAAGCCGGCTAGCATCAATAATGACACTAAAAGATTGGAAATGACAACATCATTTTCTTCTTCCTCATCCTCGATGGCTCCTGCGAGTCATCTGTTGTTATCGCTACCCCTCCAGGAGTCGGCTCGTTGCTCATATGCTTCTCTATCCTCCTCAGTTGCTCATCTTTCGGGCAATCAATGA 3402 45.56 MLMPVNQWTLLSILILCFSLLFPSLLSTFAINYQGQALLIWKLSLNGSIDELSNWDRNNETPCGWFGITCNFNKEVVELELRYVNLAGKVPSNFTSLLSLKKLVLSGTNLTGSIPKEIGVLRDLSTLDLSDNSLTGEIPSEIDALLNLQELHLNSNRLGGLIPAGIGNLTNLKLLILYDNQLSGGIPNNIGKLKKLEVIRAGGNKNLQGSLPQEIGNCTSLVILGLAETSISGFLPFSIGLLKKLQTLAIYTTLLSGQIPPELGDCTELQNVYLYENSLSGSIPRTLGRLQNLQSLLLWQNYLVGVIPPELGSCSELSVIDISMNSITGSIPSTFGNLTLLQELLLSVNQLSGELPIEIGNCPRLTHIELDNNELGGTIPSELGNLTNLTLLFLWQNKLEGSIPSSISNCHNLEAIDLSLNSLTGPIPSGIFQMKTLTKLLLLSNNLSGVILPTIGNCSSLIRFRASNNKLTGEIPPEIGNLKNLIFLDLGNNRLTGSLPPEISGCQNLTFLDLHSNSLSRPLPEDFYHLTSLQFVDLSNNLIEGTLNPSLGSFNSLTKLVLSNNEFSGNIPNEIGSCIKLQLLDLSSNHISGNIPSSLGKIPALEIGLNLSLNQLSGEIPPEFAGLDRLGSLDLSLNQLSGDLQILADMQNLVILNISHNNFSGRVPETPFFTKLPLSVLSGNPDLCFTGDKCDAENLTGNSRHTLAARVAMVVLLCAACALLLAAVYIILKDKRAWRRGISGSHEENLDDFDSDVEVGPGWEITLYQKLDFSISDVVKCLTPVHVIGRGRSGIVYRACIPSGLLIAVKRFNSSEKFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGSVRVVVDWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEACLADFGLARLVEDGQNGSSSVNPQFAGSYGYFAPEYGCMLKITEKSDVYSYGVVLLEIITGKKPVDPSFPEGQHVIQWVREHLKRKKDPVEILDPKLQGQTDTQIQEILQTLGISLLCTSNRPEDRPTMKDVAALLREIRHDQLMAGTEATDKKPASINNDTKRLEMTTSFSSSSSSMAPASHLLLSLPLQESARCSYASLSSSVAHLSGNQ 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48719220 48723683 - evm.model.ptg000008l.132 HCH8g1403 550501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1403 1133 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
HCH8g1403 1133 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 205 428 - -
HCH8g1403 1133 Gene3D Ribonuclease Inhibitor 435 697 IPR032675 -
HCH8g1403 1133 FunFam Leucine-rich repeat receptor protein kinase EMS1 524 608 - -
HCH8g1403 1133 Gene3D Phosphorylase Kinase; domain 1 766 857 - -
HCH8g1403 1133 SUPERFAMILY L domain-like 379 702 - -
HCH8g1403 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 195 644 IPR050647 -
HCH8g1403 1133 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 31 185 - -
HCH8g1403 1133 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1403 1133 Gene3D Ribonuclease Inhibitor 188 285 IPR032675 -
HCH8g1403 1133 Gene3D Ribonuclease Inhibitor 31 187 IPR032675 -
HCH8g1403 1133 Pfam Protein kinase domain 785 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1403 1133 Gene3D Ribonuclease Inhibitor 286 364 IPR032675 -
HCH8g1403 1133 Gene3D Transferase(Phosphotransferase) domain 1 858 1085 - -
HCH8g1403 1133 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524(InterPro)
HCH8g1403 1133 SMART serkin_6 782 1066 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1403 1133 SUPERFAMILY Protein kinase-like (PK-like) 772 1057 IPR011009 -
HCH8g1403 1133 Pfam Leucine Rich repeats (2 copies) 483 519 IPR025875 -
HCH8g1403 1133 Pfam Leucine rich repeat 292 351 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 858 1075 - -
HCH8g1403 1133 Gene3D Ribonuclease Inhibitor 365 434 IPR032675 -
HCH8g1403 1133 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 693 - -
HCH8g1403 1133 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 460 482 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 532 553 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 388 410 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 556 578 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 580 601 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 609 627 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 652 670 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 124 144 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 Pfam Leucine Rich Repeat 364 386 IPR001611 GO:0005515(InterPro)
HCH8g1403 1133 ProSiteProfiles Protein kinase domain profile. 782 1065 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1403 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 429 523 - -
HCH8g1403 1133 SMART LRR_typ_2 650 683 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 386 410 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 482 506 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 290 314 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 169 193 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 530 549 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 121 144 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 145 168 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 338 362 IPR003591 -
HCH8g1403 1133 SMART LRR_typ_2 554 578 IPR003591 -
HCH8g1403 1133 SUPERFAMILY RNI-like 79 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g1438 HCH-Chr6:48138116 HCH8g1403 HCH-Chr8:48719220 1.40E-101 dispersed
HCH7g1395 HCH-Chr7:46713701 HCH8g1403 HCH-Chr8:48719220 1.30E-67 dispersed
HCH8g1403 HCH-Chr8:48719220 HCH4g0303 HCH-Chr4:1977884 6.50E-62 dispersed
HCH12g1332 HCH-Chr12:29763757 HCH8g1403 HCH-Chr8:48719220 1.10E-122 transposed
HCH5g1162 HCH-Chr5:38847866 HCH8g1403 HCH-Chr8:48719220 1.00E-38 transposed
HCH3g0358 HCH-Chr3:2285860 HCH8g1403 HCH-Chr8:48719220 1.80E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81733 PF00069 Pkinase 1.10E-39 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1403 - - - 0.0