Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1410 ATGGCATCATCAAGCTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGTTGCATATTTGCACCATACTTTCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGAGCAAGCAATGTCACAAAGCTTCTGAATGAGCTTCTGCCTCACCAAAGAGAAGATGCAGTAAATTCACTTGCTTATGAAGCCGAGGCTCGTGTAAGAGATCCTGTTTATGGCTGTGTTGGAGCCATTTCCTTTCTTCAAAGACAAGTTCAGAGGCTTCAAAAAGAACTCGATGCCGCTAACGCCGACCTTATTCGGTTTGCATGTAATGAAATACCAAATGCAGGGGTTAATAATAGTCATATTCTTCAGCCAATGCGCCAGAGATCACCAGTACTTGGTAATATTGATGGATATTATAATCAAAACCAGCAACTTTCTGCTAATTTCCCTCTGTCTTATCCACTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAACGAAGGAGGAGGAGCTGATGGAAATATGTGA 552 42.39 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVNNSHILQPMRQRSPVLGNIDGYYNQNQQLSANFPLSYPLPWNENSSGNNINEGGGADGNM 183
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 48776485 48777036 - evm.model.ptg000008l.125 HCH8g1410 550508
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1410 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
HCH8g1410 183 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
HCH8g1410 183 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
HCH8g1410 183 Coils Coil 89 116 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0088 HCH-Chr2:6108360 HCH8g1410 HCH-Chr8:48776485 1.50E-40 dispersed
HCH3g1473 HCH-Chr3:52775859 HCH8g1410 HCH-Chr8:48776485 1.10E-34 dispersed
HCH4g1484 HCH-Chr4:11227302 HCH8g1410 HCH-Chr8:48776485 6.90E-24 dispersed
HCH5g0775 HCH-Chr5:5874690 HCH8g1410 HCH-Chr8:48776485 1.30E-29 dispersed
HCH8g1410 HCH-Chr8:48776485 HCH9g1382 HCH-Chr9:45403445 5.80E-29 dispersed
HCH10g0180 HCH-Chr10:1483273 HCH8g1410 HCH-Chr8:48776485 3.60E-46 transposed
HCH1g0441 HCH-Chr1:52819006 HCH8g1410 HCH-Chr8:48776485 1.00E-26 transposed
HCH13g0848 HCH-Chr13:8747991 HCH8g1410 HCH-Chr8:48776485 6.10E-51 wgd
HCH3g0362 HCH-Chr3:2309309 HCH8g1410 HCH-Chr8:48776485 9.60E-55 wgd
HCH8g1410 HCH-Chr8:48776485 HCH9g0123 HCH-Chr9:676969 3.80E-57 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34088 PF03195 LOB 2.70E-42 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1410 - - - 0.0