Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH8g1410 | ATGGCATCATCAAGCTCTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGGAGGAAATGCATGCCAGGTTGCATATTTGCACCATACTTTCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGAGCAAGCAATGTCACAAAGCTTCTGAATGAGCTTCTGCCTCACCAAAGAGAAGATGCAGTAAATTCACTTGCTTATGAAGCCGAGGCTCGTGTAAGAGATCCTGTTTATGGCTGTGTTGGAGCCATTTCCTTTCTTCAAAGACAAGTTCAGAGGCTTCAAAAAGAACTCGATGCCGCTAACGCCGACCTTATTCGGTTTGCATGTAATGAAATACCAAATGCAGGGGTTAATAATAGTCATATTCTTCAGCCAATGCGCCAGAGATCACCAGTACTTGGTAATATTGATGGATATTATAATCAAAACCAGCAACTTTCTGCTAATTTCCCTCTGTCTTATCCACTGCCTTGGAATGAAAACTCTTCTGGAAATAACATCAACGAAGGAGGAGGAGCTGATGGAAATATGTGA | 552 | 42.39 | MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRFACNEIPNAGVNNSHILQPMRQRSPVLGNIDGYYNQNQQLSANFPLSYPLPWNENSSGNNINEGGGADGNM | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 48776485 | 48777036 | - | evm.model.ptg000008l.125 | HCH8g1410 | 550508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH8g1410 | 183 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 8 | 133 | - | - | |
| HCH8g1410 | 183 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - | |
| HCH8g1410 | 183 | ProSiteProfiles | LOB domain profile. | 9 | 110 | IPR004883 | - | |
| HCH8g1410 | 183 | Coils | Coil | 89 | 116 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH2g0088 | HCH-Chr2:6108360 | HCH8g1410 | HCH-Chr8:48776485 | 1.50E-40 | dispersed | |
| HCH3g1473 | HCH-Chr3:52775859 | HCH8g1410 | HCH-Chr8:48776485 | 1.10E-34 | dispersed | |
| HCH4g1484 | HCH-Chr4:11227302 | HCH8g1410 | HCH-Chr8:48776485 | 6.90E-24 | dispersed | |
| HCH5g0775 | HCH-Chr5:5874690 | HCH8g1410 | HCH-Chr8:48776485 | 1.30E-29 | dispersed | |
| HCH8g1410 | HCH-Chr8:48776485 | HCH9g1382 | HCH-Chr9:45403445 | 5.80E-29 | dispersed | |
| HCH10g0180 | HCH-Chr10:1483273 | HCH8g1410 | HCH-Chr8:48776485 | 3.60E-46 | transposed | |
| HCH1g0441 | HCH-Chr1:52819006 | HCH8g1410 | HCH-Chr8:48776485 | 1.00E-26 | transposed | |
| HCH13g0848 | HCH-Chr13:8747991 | HCH8g1410 | HCH-Chr8:48776485 | 6.10E-51 | wgd | |
| HCH3g0362 | HCH-Chr3:2309309 | HCH8g1410 | HCH-Chr8:48776485 | 9.60E-55 | wgd | |
| HCH8g1410 | HCH-Chr8:48776485 | HCH9g0123 | HCH-Chr9:676969 | 3.80E-57 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34088 | PF03195 | LOB | 2.70E-42 | No_clan | HCH | TF |
Pathway information