Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH8g1427 ATGATAAAGATGGAAGCTGGGAGTAGGTTTTACTCAGCTATGGATGAGTTTAGATTGGAAGCAAAATGGTTGATTGATCCTAAACATCTCTTTGTTGGACCAAGAATTGGGGAGGGAGCTCATGCTAAAGTTTATGAGGGCAAATACAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGTGGAGGAGATAGCCAAGAAAGAAGCTCGGTTTGCTCGAGAGGTTGCGATGTTATCTAGAGTTCAACACAAAAACCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGGTAGTAACTGAGCTTTTATTAGGGGGGACCTTACGAAAGTATCTGCTCAATATGCGCCCGAGGTGCTTGGATACACGTGTGGCTGTTGGTTTTGCACTTGATATTGCTCGTGCTATGGAATGCCTTCACTCCCACGGGATCATTCACCGCGATTTGAAACCTGAGAACTTACTGTTGACTGCAGATCATAAATCAGTTAAATTAGCTGATTTTGGTTTGGCAAGAGAAGAGTCACTCACAGAGATGATGACTGCTGAGACGGGGACCTATCGATGGATGGCACCAGAGTTGTACAGCACTGTGACATTGAGGCAGGGGGAGAAGAAACATTACAACCATAAAGTGGATGCTTATAGCTTTGCAATTGTGTTATGGGAACTGCTACATAACAAGTTGCCATTTGAAGGCATGTCCAATCTTCAGGCAGCATATGCAGCTGCTTTTAAGAATGTAAGGCCAAGTGCAGAGAATCTACCAGAAGATATGGCTATGATTCTAACATCATGCTGGCAGGAGGATGCAAATTCTCGGCCGAATTTTACCCAAATCATCCAAATGCTACTCAATCACCTTTTCACCATTTCACCCCCTGAGCCTGTGATTCCTTCTCGAATTTTCGCTTCTGAGAACACAGTCTTTCCTCCAGAATCTCCCGGAACAAGCTCTTTGATGGCAGTCCGTGACGATTCAGGAGACACTCCAAAAACAAGAATGGAAAACAAGAGCAGTGGTTGTTTCTTCTGCTCCAATGACTGCTACTAG 1071 43.98 MIKMEAGSRFYSAMDEFRLEAKWLIDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETVEEIAKKEARFAREVAMLSRVQHKNLVKFIGACKEPVMVVVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKSVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEDMAMILTSCWQEDANSRPNFTQIIQMLLNHLFTISPPEPVIPSRIFASENTVFPPESPGTSSLMAVRDDSGDTPKTRMENKSSGCFFCSNDCY 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48871440 48874391 + evm.model.ptg000008l.108 HCH8g1427 550525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH8g1427 356 Pfam Protein tyrosine and serine/threonine kinase 35 290 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 CDD STKc_MAP3K-like 36 290 - -
HCH8g1427 356 ProSitePatterns Protein kinases ATP-binding region signature. 36 57 IPR017441 GO:0005524(InterPro)
HCH8g1427 356 SMART serkin_6 30 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 ProSiteProfiles Protein kinase domain profile. 30 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 Gene3D Phosphorylase Kinase; domain 1 18 109 - -
HCH8g1427 356 SUPERFAMILY Protein kinase-like (PK-like) 22 319 IPR011009 -
HCH8g1427 356 PRINTS Tyrosine kinase catalytic domain signature 106 119 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 PRINTS Tyrosine kinase catalytic domain signature 144 162 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 PRINTS Tyrosine kinase catalytic domain signature 218 240 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 PRINTS Tyrosine kinase catalytic domain signature 261 283 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH8g1427 356 FunFam serine/threonine-protein kinase HT1 111 309 - -
HCH8g1427 356 Gene3D Transferase(Phosphotransferase) domain 1 111 298 - -
HCH8g1427 356 MobiDBLite consensus disorder prediction 318 340 - -
HCH8g1427 356 FunFam Kinase suppressor of Ras 1 19 109 - -
HCH8g1427 356 PANTHER SERINE-THREONINE PROTEIN KINASE 24 292 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH8g1427 HCH-Chr8:48871440 HCH8g1378 HCH-Chr8:48511990 2.60E-41 dispersed
HCH11g0030 HCH-Chr11:748463 HCH8g1427 HCH-Chr8:48871440 4.70E-118 transposed
HCH14g0551 HCH-Chr14:34471222 HCH8g1427 HCH-Chr8:48871440 7.80E-81 transposed
HCH13g0856 HCH-Chr13:9061632 HCH8g1427 HCH-Chr8:48871440 2.00E-155 wgd
HCH8g1427 HCH-Chr8:48871440 HCH9g0113 HCH-Chr9:592760 3.50E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81735 PF07714 PK_Tyr_Ser-Thr 2.60E-57 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH8g1427 - - - 0.0